Clone Read LE_HBa0131F15_SP6_112004

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0131F15_SP6_112004
Primer
SP6
ID from Seq. Facility
LE_HBa_131_F15-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1423 raw
Sequence
>LE_HBa0131F15_SP6_112004 (raw untrimmed)
CCCCGAGGTTTTTCCCTCAGGATAGGAAAGACCACACCGAGCAGTTGATCGAGATCCTTAGGACAAGAGATTAGCTAGACCACATCATATAAACGCTCCG
TTTAAGAGGTTTTTATCAGTCGTAGCTCGCTCTATAAAGCATAGACGCCCCCTCTTATTGGATATATAGGATAGTGCGAGGACTCGACGACCAAGGATTT
TGACTCTATGACTAGCGCTGAGCACAGAACAAATAATCCTCTACAGCGTATGCCACACTCATAGATGTATATATATACGTACAAGTCGTCTGAAACCGTT
GAACTAGTATACAGTGTGTATTCAGCGATTGAATAGCATAAATAGTAGGTGGACAAAACCAAAAATATTCCTATCACGGCTATACATCAGGGGCTGTGAC
ACAGAAAACCTATAGCTGTACACTCTAACCTGTTAGACCTCAGTACACCTCGAGAAATCGAAACAGATACCGAACGAACTTTCGTATGAGGACTGCCACA
GCGCGCATCCTACATAGGGACTGTAGCAACCCAATCATCGTCAGTTGATCGAGATTAGTAGCGAAGAGCGGAATATACTAGCAGTCTCATGGCACTCGGA
AATATTGCATCCACTGACTATATATCTAACGAGCTATCTACTCAGACACTAATAGTCGAACTACTAGATCTCTACCATATGATTCACATTGGTGACCCAC
GACCATTCGCAATACAGATCACCAAGAAAAAGTCTCTGCGCAAGGCATTAAAGTTACGTTCGACTACATTAAAGATTTAACTGTGAAGTGTCTCGTGTAT
TTATACCTCGGACTCTCAATAGACCATTAAATGTTATCAACTAAGCGGGATTGAGTCTCTGAAGGTCTGTCCAGAAATACATTCATGGGAAGCCTGCCAT
TCATTATTGCTCAGCTCCCAATGCGCACTGCGAGTGGCGAAACGTTTGCTCCTATGGCAATACTACTGTCACTTCTTCCATTACAGTCTGTTNAATCGGT
TATTGCCCAAGTTTGTTAGTAACCTTCAATCATCCCTAACGCTGAGCCTTATAAGTAGCTCGCAACTGAACAGGAATCACTAAATCATAGAGATCTGTAT
GCAAGCTCTGATATGCGGAGGCAAGGAGCTCACCCTTCGCTGATCCAGCCTCAGGAGAATGATGTGAACATCAGCTCTAATACTANGCTCAACTTACCCT
TACACTGCCCACTTCGGTACCATGCGTCCCATCAGCCTAACGCCAACCCATCCTATATCCTCTCCTACGCTCGCGTCATCAACTACACTTAGTGCTCCTG
TAAGACTTCTGTTTTCCACCGTACNATACTGTCTCCCGCTGNTNCTCGTATNCTNCGTCTACATTCTCTGACTTATCATATCAATTCTCTCTGTCAACAC
TTCGAGTTATCGCCGTTCTTCAT
>LE_HBa0131F15_SP6_112004 (trimmed for quality and cloning vector)
TT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.3557
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0131F15
Clone
Clone name
hba-131f15
LE_HBa0131F15
C01HBa0131F15
P131F15
Clone type
BAC
Contamination
none
Estimated length
101,841
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found