Clone Read LE_HBa0045B03_T7_121361

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0045B03_T7_121361
Primer
T7
ID from Seq. Facility
LE_HBa_045_B03-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
833 trimmed for vector and quality, 889 raw
Genbank Accession
DU068413
Sequence
>LE_HBa0045B03_T7_121361 (raw untrimmed)
CTAACCTGGGCCCCGGGGGACCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTTGAAGCTATAAACCTACCACTTTTTTCAACTAGAGGAGAAAGTATAG
TTAATTGCTTATCTCTCTTTGAAGTAGGTGAATTCATAAATATTACTTATACTATTTTGAATATATTGATTTTTAATAATTGGCTAACTGTGTCTAAATA
TTTTTATTGCTAATACTAGGATCAACATCGGGTGCATCTCATGCTGCAAGCAGATCAAGTTCAAGATGTGCTTCAAATAGAAGTATGCTTCTTTCTACGA
TAGTACTGAAAAACATGCACTGTTCTGCCTTTACGTAACAAATAATTGCTTTTTACCGTGCACATGTAGAAATAAGTTAGAAGTAAATCTACCAAATGAT
AATTTATTTCCAAAAGATTACTTACTTTTAAAGAAAGTTCCAAATTACAAATTTTGTGCAGCAAAAAGGTTTCAATATGAATCAGCAGCTTTTTGTTGTA
ATAATGGATCAATTAAGATAACTTCTCATAGCATGCCTATGGAGTTGTGAAATTTCTTCTTAGCTGACTCCAAAGAATCCCAACACTGCACTTACAATAG
AGCCTACAATAATATGTTTGCATTCACTTCACTTGGCTTTGATAGACAATTAGCAAGGAGAAATCATGGCTTTGATACATTTAAAGTCCAAGGACAAATG
TATCACTTCATTGAAGATTTGATACCCTCAGGAAGGAAAGGAAAAAATTTACAATTATATTTCTAAGATAATGAAAATGAGCTAACAAACCGAATGACAT
TTATCAAATAATCTTAATGAGGTATTTTTACAGATCTCAGGGATATCCAAAAATTTATCCTTATTCAACTTTTTAATATCCCTAAAATT
>LE_HBa0045B03_T7_121361 (trimmed for quality and cloning vector)
AGCTTTTGAAGCTATAAACCTACCACTTTTTTCAACTAGAGGAGAAAGTATAGTTAATTGCTTATCTCTCTTTGAAGTAGGTGAATTCATAAATATTACT
TATACTATTTTGAATATATTGATTTTTAATAATTGGCTAACTGTGTCTAAATATTTTTATTGCTAATACTAGGATCAACATCGGGTGCATCTCATGCTGC
AAGCAGATCAAGTTCAAGATGTGCTTCAAATAGAAGTATGCTTCTTTCTACGATAGTACTGAAAAACATGCACTGTTCTGCCTTTACGTAACAAATAATT
GCTTTTTACCGTGCACATGTAGAAATAAGTTAGAAGTAAATCTACCAAATGATAATTTATTTCCAAAAGATTACTTACTTTTAAAGAAAGTTCCAAATTA
CAAATTTTGTGCAGCAAAAAGGTTTCAATATGAATCAGCAGCTTTTTGTTGTAATAATGGATCAATTAAGATAACTTCTCATAGCATGCCTATGGAGTTG
TGAAATTTCTTCTTAGCTGACTCCAAAGAATCCCAACACTGCACTTACAATAGAGCCTACAATAATATGTTTGCATTCACTTCACTTGGCTTTGATAGAC
AATTAGCAAGGAGAAATCATGGCTTTGATACATTTAAAGTCCAAGGACAAATGTATCACTTCATTGAAGATTTGATACCCTCAGGAAGGAAAGGAAAAAA
TTTACAATTATATTTCTAAGATAATGAAAATGAGCTAACAAACCGAATGACATTTATCAAATAATCTTAATGAGGTATTTTTACAGATCTCAGGGATATC
CAAAAATTTATCCTTATTCAACTTTTTAATATC

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.934782
Expected error %
1.4085
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_917216.1| Score 94 E Value 5e-18 Identity 12.80% Align. Length 383bp (45.98%) Frame 1
P0707D10.33 [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_917837.1| Score 93 E Value 8e-18 Identity 12.70% Align. Length 410bp (49.22%) Frame 1
B1158C05.18 [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0045B03
Clone
Clone name
hba-45b3
LE_HBa0045B03
P045B03
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found