Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Clone Read LE_HBa0045P14_T7_121708

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0045P14_T7_121708
Primer
T7
ID from Seq. Facility
LE_HBa_045_P14-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
677 trimmed for vector and quality, 896 raw
Sequence
>LE_HBa0045P14_T7_121708 (raw untrimmed)
CATACCTGGGACCCGGGGGATCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGTCAACGGCTGCTTTGACCCTTTTTGAATGAACATATCCTCCCCTCCT
CGAATCATACATATGTACATCTACTTTTGTATTCTGAATGCTACTAGAAACCAATGCAATTTGTCATTGATGTTGACTGGGATGATTACTTCATCCACCC
TATCCGCTACGGAATGTTATCAAGCAACTATATATCCTCCAATGCATTGTCCAACTTCATGGACCGGTGATATAGCATCTCGTGCTCCGTTGAGATTGTC
TCCACTTGATTTCTCATTGTAATCTTCTCATGCTATAAACCAACTATCTACCATACTGAAATAAGTGACTGTTTAGGGAGTATTTTACCTTCATTCAGAA
ACAATACATTATTATAGATAATATGCTGATCTAACAAAAAAAAATACATATCTGATTCATTCTCTATACACACATATTTCATACAGAATATATGCATACT
GAAAACATACAAATATCACACATATGACATACATAAAATATACACACTATAAACATGCCCATATCACAATATTTGCTACAGAACACTTCCATCCAGAAAA
CATTCATCTATCACATATTTCATACAAAAAATCTACATACAGATGACATACATATGTCACTGCAACAGTACTGTCCGAAGTTAGTGATTATTATGCCTTT
TTGCACATATTAGACATTATTGTATAACTATGTTGTTTTTCCAAAAAAGTAATACGTTTCTAACTCATTCACTGTTCACACTTATTTCTCCCACAAAATA
TACGTACTGAAAACTTACATTTTTCAGTGGCAACTTAATACATACTGATTGATTGAAAAAAGGCCTTACCCGTCCTCCCAAGGCCGCCCAGTTAAA
>LE_HBa0045P14_T7_121708 (trimmed for quality and cloning vector)
AGCTTGTCAACGGCTGCTTTGACCCTTTTTGAATGAACATATCCTCCCCTCCTCGAATCATACATATGTACATCTACTTTTGTATTCTGAATGCTACTAG
AAACCAATGCAATTTGTCATTGATGTTGACTGGGATGATTACTTCATCCACCCTATCCGCTACGGAATGTTATCAAGCAACTATATATCCTCCAATGCAT
TGTCCAACTTCATGGACCGGTGATATAGCATCTCGTGCTCCGTTGAGATTGTCTCCACTTGATTTCTCATTGTAATCTTCTCATGCTATAAACCAACTAT
CTACCATACTGAAATAAGTGACTGTTTAGGGAGTATTTTACCTTCATTCAGAAACAATACATTATTATAGATAATATGCTGATCTAACAAAAAAAAATAC
ATATCTGATTCATTCTCTATACACACATATTTCATACAGAATATATGCATACTGAAAACATACAAATATCACACATATGACATACATAAAATATACACAC
TATAAACATGCCCATATCACAATATTTGCTACAGAACACTTCCATCCAGAAAACATTCATCTATCACATATTTCATACAAAAAATCTACATACAGATGAC
ATACATATGTCACTGCAACAGTACTGTCCGAAGTTAGTGATTATTATGCCTTTTTGCACATATTAGACATTATTGTA

This is probably not a useful sequence.

Problems:
  • High predicted error rate
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.933626
Expected error %
5.8522
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0045P14
Clone
Clone name
hba-45p14
LE_HBa0045P14
C10HBa0045P14
P045P14
Clone type
BAC
Contamination
none
Estimated length
96,217
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found