Clone Read LE_HBa0163B20_T7_123298

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0163B20_T7_123298
Primer
T7
ID from Seq. Facility
LE_HBa_163_B20-T7
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1040 raw
Sequence
>LE_HBa0163B20_T7_123298 (raw untrimmed)
AAATCGGAGTCGAATGTAATCGATATATATATAGATAATCGACCTACTGATNGTAGCGAGCAGCAGCAGCAGCGGCGGCGGCGAGCGGCGAGGGCGGCGG
CGAGGAGGAGGGCGGTGGTGCGGCTGCTGATGCTGCTGCTGCTGCTGCTGATGATGTTGATGAAGAAGTAGTATNAGTAGTAGAATAGTTGGACGGTGGT
GCCTCCTAAACACGCAGACGACAGAGCAACGCAACAAGATGCNCACTCGAACTGCCATGTATATGATCTGACAGCACCAGTTCTGACGCGACCACTGACG
ACGCGCATCACAAGCTGGTGTTCATAGCATGTATACATGTTCTCATGAGCCCGTCTAACCAA
CACACGCGATTGTACNCGACCATTTGGCCTGCGCAGAG
CGCATTGTTTGCGTAGGCACGCACCTGTCTACGTTAGCGATACACCTTCTTTGTCTATCTAGATCTCTGTTTCCATTCTCCTAGCTTGTATCTAGTTCTT
TTCGACCACACCTCCTCACACCCTCGCTCATCGTACTATCGTTTGTGCATGGCCTCTGCGCGCTAATTNCATNGGCTATATGCATAGCGCGCGTGNTCTN
CAGCTGCGGATCGCGCAGCTCCTGCTGGACATGTGTCGCTCTGCGTCGTCGTGAGCGTGTCATGCTCTGCGGAGAGGAATTCAGAAATGCGACCTAGCAG
GTACACAGCACGATCGTGGTCCCTCGCAGTTCGTGAGTACCTACACTCAGCACAACGTTATGGTCAATTCGTCCTCAGCTGGACAGCGTAGAGCTGACGT
GCCAGCGCGCTCATGGGATTACCCATCTCGAGTACTCTCGCAGTCGTGTTGTACATCACTACCGCCAACACGATATTTGATTGACCAAATATGCTATTTA
TTTGATTAGTAATACTCTGATCGTCTGGCAGATCTACACATCTTCCTTGCTAATCTTACTATAACTTATAATCGTCGATATCTATTGATCTCTCAATGTC
ATTCTCTGACTTTGTTATCTGATGCCTCCANTCTGTCANA
>LE_HBa0163B20_T7_123298 (trimmed for quality and cloning vector)
CA

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.8966
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0163B20
Clone
Clone name
hba-163b20
LE_HBa0163B20
C01HBa0163B20
P163B20
Clone type
BAC
Contamination
none
Estimated length
113,782
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found