Clone Read LE_HBa0163J23_T7_123493

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0163J23_T7_123493
Primer
T7
ID from Seq. Facility
LE_HBa_163_J23-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
354 trimmed for vector and quality, 874 raw
Sequence
>LE_HBa0163J23_T7_123493 (raw untrimmed)
ACTCAACCTCGTCCCCGGGGGACCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGTCAACAATGGAAGCAGTTCTCATTGCAAGTGAGTGTGGATTCCAA
ATTGAAAGGAAACATTTCAGGGGTAACGTGCAAGCTGGACATTGAAAAAGCATATGATCATGTAAATTGGGGTTTCCTACTAAACACCTTCAGACAAATG
GATTTTGGAGAAAGATGGGTGGCATGGATAAAATTTTGCATAAGCACGGTGAGATTCTCCATTCTTGTAAATGGAGAACCGGTGAGTTCTTTCTCTTCAG
GAAGGGGAATCAGACAAGGTGATCCTCTTTCACCCTTTCTATTTATCCTGGTAATTGAGGGATTTGATAGTTTGATAAGGATTGCTACTCAAAACAGGTG
GATCACAGGTTTCCAAACAAATGAAAACAATCGGTGATTTTCATGAGATTTTTCATCTATTCAATGATATATGATTCTGTAAGTCTCCATAGATGATTTA
GACATAACTATTTTAAATTCATCATACTTATAAATATGCATAGTGTTACCTATCTTGTCTTAGATAACAAAATCAACCACGACTCACACTACACTATATG
ACCTAAACAGCTGTCACGCATATTCTCCGCCTGCCAATGAAGTGCGACTTAGTCTTGTTTGTTCTCGATATTTATTATTATGTTATTTTTGCCGGAGCAA
CCCGGAATACAGCCGAATACTTATCATGTCTCTTCTACCCCCTATTCCATACACACTCACCCTTTCTTATCCTACTCATACTATTCCTTTCTTGTCTTTT
TCTCTGAGGAATTCAATCCGGTTATTCAAATCGTGATAACTACTTTTATTCTGTCACTTCTTCTCTTAATTAAC
>LE_HBa0163J23_T7_123493 (trimmed for quality and cloning vector)
AGCTTGTCAACAATGGAAGCAGTTCTCATTGCAAGTGAGTGTGGATTCCAAATTGAAAGGAAACATTTCAGGGGTAACGTGCAAGCTGGACATTGAAAAA
GCATATGATCATGTAAATTGGGGTTTCCTACTAAACACCTTCAGACAAATGGATTTTGGAGAAAGATGGGTGGCATGGATAAAATTTTGCATAAGCACGG
TGAGATTCTCCATTCTTGTAAATGGAGAACCGGTGAGTTCTTTCTCTTCAGGAAGGGGAATCAGACAAGGTGATCCTCTTTCACCCTTTCTATTTATCCT
GGTAATTGAGGGATTTGATAGTTTGATAAGGATTGCTACTCAAAACAGGTGGAT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.953294
Expected error %
0.1895
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAL78659.1| Score 125 E Value 3e-28 Identity 18.20% Align. Length 290bp (81.92%) Frame 3
reverse transcriptase [Fagus sylvatica]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAE04660.2| Score 101 E Value 6e-21 Identity 15.30% Align. Length 293bp (82.77%) Frame 3
OSJNBa0061G20.16 [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0163J23
Clone
Clone name
hba-163j23
LE_HBa0163J23
P163J23
Clone type
BAC
Contamination
none
Estimated length
99,044
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found