Clone Read LE_HBa0175O01_T7_124359

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0175O01_T7_124359
Primer
T7
ID from Seq. Facility
LE_HBa_175_O01-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
429 trimmed for vector and quality, 778 raw
Genbank Accession
DU053802
Sequence
>LE_HBa0175O01_T7_124359 (raw untrimmed)
TTGGGACCGGGTGGATCTCTAGAGTCGAGGTGCGGGCATGCAAGCTTCTGATATTTTCCGGGGAGCCCTCTTTCTCCATCTTCTCCCTTCAGTGCCACCA
GCTCTAGTCCATCTTGACTTCTGCAGCTAGTTGACCACCTCTTCCCGTCCAACCTACTCAATGCCTCGAGATCAAGTTCTCCAAAGTTTGTGGAGAGCTC
ATCATCACTATGTCCAGTTCCCATTGAGGATAATCCTTGTCCATCACCATTGGTTAGCAATGGAATGAGGCCTTGAGCACCATTCCTCGAACTGTGTCTC
CTCTTGGTGTAACCTAAAGATGATCCGCGGCGTCTTCTTTGATACATAGTTTGACTTCCACACAAAATGCTGCTTCCTTTCCTCCTCAAAGTATCAGAAA
AGGATGGTGAATAACAACTCCCACCCCCACCCCTATATTTTGGTGTTGACCTCCTGGACCAACAAGGAATCCCACATCCCTGTTCGACCAGGCAAATCAA
GCTGATCATCCACCTCATCATCCCCATCATTGAGAGAAGCCGTTGTGGCATCCCATGACCCATCAGTACCTTGGATTTCCATTTCCATATCCGTCGAATG
AATCTGTTAGACAATGCAGGGGAGTTATATCGTCTTTCCACTCATTCCTCCCTCCCACCATCTTCTCTACCTTAGACTAATCCAATAATCCCGATTCTCA
TTTCTTTACCTTCTCCAATCCAATGCGGCAAGCTGCCTGCACTCCCCTCTTTTTCTTCCTTGGGTTCTTATTTTCTCC
>LE_HBa0175O01_T7_124359 (trimmed for quality and cloning vector)
CTTCTGATATTTTCCGGGGAGCCCTCTTTCTCCATCTTCTCCCTTCAGTGCCACCAGCTCTAGTCCATCTTGACTTCTGCAGCTAGTTGACCACCTCTTC
CCGTCCAACCTACTCAATGCCTCGAGATCAAGTTCTCCAAAGTTTGTGGAGAGCTCATCATCACTATGTCCAGTTCCCATTGAGGATAATCCTTGTCCAT
CACCATTGGTTAGCAATGGAATGAGGCCTTGAGCACCATTCCTCGAACTGTGTCTCCTCTTGGTGTAACCTAAAGATGATCCGCGGCGTCTTCTTTGATA
CATAGTTTGACTTCCACACAAAATGCTGCTTCCTTTCCTCCTCAAAGTATCAGAAAAGGATGGTGAATAACAACTCCCACCCCCACCCCTATATTTTGGT
GTTGACCTCCTGGACCAACAAGGAATCCC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.957554
Expected error %
0.6094
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g02480.1 Score 176 E Value 6e-45 Identity 22.20% Align. Length 413bp (96.27%) Frame 2
68415.m00187 DNA polymerase-related weak similarity to DNA polymerase III holoenzyme tau subunit [Thermus thermophilus] GI:2583049
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g14460.1 Score 141 E Value 2e-34 Identity 20.50% Align. Length 365bp (85.08%) Frame 2
68414.m01715 DNA polymerase-related weak similarity to DNA polymerase III holoenzyme tau subunit [Thermus thermophilus] GI:2583049
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAC18938.2| Score 176 E Value 2e-43 Identity 22.20% Align. Length 413bp (96.27%) Frame 2
similar to prokaryotic DNA polymerase III gamma subunit [Arabidopsis thaliana] ref|NP_565285.1| DNA polymerase-related [Arabidopsis thaliana] gb|AAF82285.1| STICHEL [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
pir||T00615 Score 176 E Value 2e-43 Identity 22.20% Align. Length 413bp (96.27%) Frame 2
DNA polymerase III gamma chain homolog T8K22.22 - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0175O01
Clone
Clone name
hba-175o1
LE_HBa0175O01
P175O01
Clone type
BAC
Contamination
none
Estimated length
118,604
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found