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Clone Read LE_HBa0176A14_SP6_124420

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0176A14_SP6_124420
Primer
SP6
ID from Seq. Facility
LE_HBa_176_A14-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
3 trimmed for vector and quality, 840 raw
Sequence
>LE_HBa0176A14_SP6_124420 (raw untrimmed)
AAATCCTCAACATTTCATACATCTGAATCCCCTTTATAAGAGGGGACCCACCAGAGGACGAGGGGAAGGNACCAACAACAGCATCAAAAATCGCAAAAGC
ACACGAGCGCACCCAACGCCGGCCCCGCGGCAGAAGACGGGACCGGACACCGACAAGAAGAAAACGCAAACCACAAACAAGGAAGAGAGACGACGCCACC
CGANCGCGACGCCAAGAGCAAGCCAAACCAGAACCACCAAGCCACNGNNGAGGCGAACAAAAAGGCACGAGGGCCAGCCGACGCGAGCGCGACACAAGCA
CGAAGAGCCCACACAACACCGAGAGGACAACAACAAACAACGGGCAGACAGAGACACAAGACAGAGCACCAAAGCCACAACAAAAGACAGCCACACAGCG
CGCAGCGACACAGACGACGGAGAGACCAAGACGCACAACCGGAGCCCCACCCCCGAAACACCCGAGAACAACAG
AAAAAAAGCGACCAAACGGGCGCAAG
ACAAGACCACCAGCCACCACAGACAACACACCCGCGACCAAGCCCCGCCCACCCACACGAGGAGGACCCCCCCACACCGGGGACCCACCGAACACCCAAC
GAACGCAAGCGCGCGAGAGGAAAGACGCGACGCACAGCGCGCAAGGCACGCCACCACCCCAGACAAAAGACNGCAGCAACCGCACAGAAACAACCAAACA
NAACAACCGCGCCGAAAAGNGGCAACCACAAGACAAAGACGAGAGAGCCAACGCACGCGAAGCAGCCCGCCCAAAGAAAGACACCCAACACACACCGCGA
AGAACCACAACNACACACCACACAAACACCAACAACCAAC
>LE_HBa0176A14_SP6_124420 (trimmed for quality and cloning vector)
AAA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.9258
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0176A14
Clone
Clone name
hba-176a14
LE_HBa0176A14
P176A14
Clone type
BAC
Contamination
none
Estimated length
91,923
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found