Clone Read LE_HBa0176F18_SP6_124544

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0176F18_SP6_124544
Primer
SP6
ID from Seq. Facility
LE_HBa_176_F18-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
441 trimmed for vector and quality, 460 raw
Sequence
>LE_HBa0176F18_SP6_124544 (raw untrimmed)
GGGAGGGAGGTAACTTCTTTTCTATCACGGGAACCATTCAGGCCTAAAACATCGTTGAGCTTGCTTGATGGGACGTGCACCGCTTTTCACAGCAAGATGA
TGGAGTGCTAACTTTGGGTCTAATCCACGCATTTCTTAGTAATTCCAAGAGAATACATCTTTATACTCTTTGAATAAGTTGATGTAGGCCTTTTCCATAT
CACTTGCTAGTGAAGCATTCACATAAGTGGGTTTTGGATCTTCATCAGTTTCAAGGTTGATTTCTTTCAATGCATCAACAATCACCTTTATTCCTTCTTC
AAGTTCAGGTGGCGCATCTTTAGCATCTTTATCTTCTTGAGGTTCTCCATCATGGAAAGATATATGTTAACACCATGAGACATTCTCCGACTTTCTAGCA
ATTTTAATTGGAGAAAAAATATGCCTTTCATCTTATGTAGTGACATGATATGAAGAGCCA
>LE_HBa0176F18_SP6_124544 (trimmed for quality and cloning vector)
TTTTCTATCACGGGAACCATTCAGGCCTAAAACATCGTTGAGCTTGCTTGATGGGACGTGCACCGCTTTTCACAGCAAGATGATGGAGTGCTAACTTTGG
GTCTAATCCACGCATTTCTTAGTAATTCCAAGAGAATACATCTTTATACTCTTTGAATAAGTTGATGTAGGCCTTTTCCATATCACTTGCTAGTGAAGCA
TTCACATAAGTGGGTTTTGGATCTTCATCAGTTTCAAGGTTGATTTCTTTCAATGCATCAACAATCACCTTTATTCCTTCTTCAAGTTCAGGTGGCGCAT
CTTTAGCATCTTTATCTTCTTGAGGTTCTCCATCATGGAAAGATATATGTTAACACCATGAGACATTCTCCGACTTTCTAGCAATTTTAATTGGAGAAAA
AATATGCCTTTCATCTTATGTAGTGACATGATATGAAGAGC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.948697
Expected error %
0.0994
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAD41628.3| Score 98 E Value 8e-20 Identity 14.40% Align. Length 311bp (70.52%) Frame 3
OSJNBa0091D06.8 [Oryza sativa (japonica cultivar-group)] ref|XP_473330.1| OSJNBa0091D06.8 [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|XP_462905.1| Score 91 E Value 1e-17 Identity 15.40% Align. Length 272bp (61.68%) Frame 3
putative gag-pol precursor [Oryza sativa (japonica cultivar-group)] gb|AAK92670.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0176F18
Clone
Clone name
hba-176f18
LE_HBa0176F18
C11HBa0176F18
P176F18
Clone type
BAC
Contamination
none
Estimated length
51,634
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found