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Clone Read LE_HBa0176O07_SP6_124749

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0176O07_SP6_124749
Primer
SP6
ID from Seq. Facility
LE_HBa_176_O07-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 1002 raw
Sequence
>LE_HBa0176O07_SP6_124749 (raw untrimmed)
ATCACTAATCAGGAACTTCTTCAGTGGACAGCTTCCCCCTCTCTTGTAGGGGGAGCCCTTGCATCGAGTGTGTGTGTGGTGAATTGAAGAAATGAGCTTG
ATTACTATTACTACATTACCATCGGGGTAGGTTTGTATTGTCGGCNCGTGACCGCATGTTCTCTGCGTGCGGCGCAATTAGNTCGAGCAGCGAGCGCGTG
GAGATCCACTCACCGATGATGGTATTGTCACTTCCTTTCTGTAATGTTGACCAGCAGATTGTAGACACGGCCTTACGGTGNACATCGCTGTCATATATCG
TGGTTGCGATGAGTAGGTCAGATTNAAGATACGTCCTGACAGCGGCGACGAATGCGCGTACCGTACGCGAAACTAACGGGAGCGAATTGTATAGAGGTCA
TGCGTCGACTGTCTCGTAGACTTGATTAATGTACATCNTTACCACGCGCCACTTCAACAATCGCTGCGCTGTGAACGCACCCNACGGACAAGACGGTGAA
GACCGATCTCAGAACTGTAGTACTAGTACTCTCATGACACGGATCGAGATACACTAATACATGCCTGATTTCTGAGTCCAATCCTGTTAAGNGCTAGACA
CGCTCTCGCGAGCGGACATAGAACAGTACTAACTCTGGCTGACACCACTATATCAGGAAACACTTACCACATGGCAATCGCCTCCGATCACTACGCGCCA
CGCCGGCCTAGTAGGGCGACCGCGCAATGGTATCTGCGAGGTCGCAGATGCATGAGCGGACGTGTGCAGAGCTAGGACGCGCCCACGGTATGGCAGGTCN
GATTAGAGTGAACCAATGTACTTAGTCAGAGTATATTATAATAGTCTATTAGGTCATTAGTATGTATCTTGTTTCACTGTACTGTTCTTCCATCAGTATT
GACTCATACGATTTGGCGAATAATGAGACTTCGATNGCCTCTCTNCTACTGCTATATGTGATCTGTCTGCGCTNGCGACGAGCTCAATACTGCGTTACAA
GC
>LE_HBa0176O07_SP6_124749 (trimmed for quality and cloning vector)
A

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
  • High predicted error rate
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0176O07
Clone
Clone name
hba-176o7
LE_HBa0176O07
C03HBa0176O07
P176O07
Clone type
BAC
Contamination
none
Estimated length
71,462
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found