Clone Read LE_HBa0178F20_SP6_124930

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0178F20_SP6_124930
Primer
SP6
ID from Seq. Facility
LE_HBa_178_F20-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1180 raw
Sequence
>LE_HBa0178F20_SP6_124930 (raw untrimmed)
AACAAACGCTGTCCGGATAGGCTCCGCGGCGGTTCGAGGGGGTATTGTTCCCTCATTGGGGACATATATAGCATAGCGCCCTGCGGTAGCCATATACGAA
ATCCCTCCCTTTTCTACCGTGAACGAGGAAAATGCGAGTTTCTCGCCTCCCACCCGCTGAGCTCCGTTACTTGTGAGCGTGTGCTTGTTATCATAGGAGG
AAGCCTCAGTCTGCCAAATGTGTCTCTCTTGGCTTTAGTGCTTACGTTGCCAATGTTTTTTGTTAAATTCATGGTTTATTACATATATTGTGTAGAAAAG
GAGTAAACCTTGCTGCAAAGTGCCAGCGTTATGACTTGGGACCAGGTGACTGTGCCACTGGCGAGTACATATGCTGCGCAGATTGATGTAATCTGTTGAG
CCTTGTCTAACTTGCTCGGATCTCACCTATACCTGCACCTCTTGCTGCTTGCCTGATACAATTCTGATCTGTGAACTTATCATTCGTTCTATCAATGTCT
TTTGATAGCCTGGCTTGCGTAGAGGAGANTGGGTGCTTGTCTTGTGAGTCTTAAGATGTGNAGTTGTATCCTCTGTCTCTAGTGTCTTTTACAATCCGTA
TTCCGAATTGTCATCCATATTTGCAAATCTCTTTAAGCTATATAATTGTACTATGTGTATAAGTGATTGACTCGTACAACTTATCCGAAGTGCCTCATCT
GCGTCGACTCGCTCTCCTGTCGTCTGCAATCCTATAGCAAACTCTTTAGCCTTTTTTATCTTTGTGCTGAATGATTATATCTAGCTGGTTAACGTGCTAA
CGCTGTGCGCGGTCTGTGTCCTCAACGCTCATACTGACTTGTCACCTTTACTCCTCTGCTCTACATCTGGGTAGCATGACTCACCTTTTGATATAGATTT
TATAATGATCTTAGACTTACTCTTGATAGAGAATTATCTACAATAAATTGACATAGAGATAAAGATCACTCTGATAAACGAATCATAATTACAGTCTTAT
CCGTGAGTGTTACAATTGACTAACTAGAAGAAATGACGATCACGAGATCGTGTGTAACATTCAGGTGATGCGATTCATCAACTGCAATTAAACTTATACC
TGCAAAAATCCATAGCCATAGAAGCAAGGTGAGCTCCAAATGTTTCTCTACGACTCGAAATATACACGATATACAATCAA
>LE_HBa0178F20_SP6_124930 (trimmed for quality and cloning vector)
TT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
2.6315
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0178F20
Clone
Clone name
hba-178f20
LE_HBa0178F20
P178F20
Clone type
BAC
Contamination
none
Estimated length
111,744
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found