Clone Read LE_HBa0179J06_SP6_125396

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0179J06_SP6_125396
Primer
SP6
ID from Seq. Facility
LE_HBa_179_J06-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
645 trimmed for vector and quality, 1022 raw
Genbank Accession
DU053114
Sequence
>LE_HBa0179J06_SP6_125396 (raw untrimmed)
CCCGGGCTATCCGTACAAAGAGGAAGAGAGCAAACCTGGGCTCTTGCAGCCTCGTCAGGAGCATGATGCCTCAGGAGCAAAATAACAACCACAGCTACTA
TCGCGTAGAAAAGCCTTGCTGTCCTCTTAGGTCGCTCGCCTTCATCCTTCTGAGGCCAAACTTGGAACAAATCTTGCAGTGTTGCTTCCTCGGCCAGAAT
GTTGGGGAAAAACCATACACGCTTCCCAAAAAGTACCCAAATAGCACCAAAGATCAAAGCTCTTACTGCAAGCACAAAATTGTTCTTTGTAATGGTGATT
TATGCCCAATAGCAGACTCAAAAATATACATGACAAATTTGACGAGCATCCAGAATTACCGTTTTACAACAGGCATATTTTGCACAAATAAAGGAAATAT
TAGACACCACTTCCAGCAGAAATACTTTAATAAAATTTGTTGATGAGTGCCACTTAGGGATTTGGATGATTCAAGTGAAGGATAACAGAATATGGTTAGC
ACTTCCCACAGAGCTGTCATAGACACAAAGCGAAAAGAATCTATCTGTCTATTGTAGAGTTCCTACGATAGTAAACAGTATTGTGAACTAACGAAAGTGT
GCAGGCATTCAAAAATCCTAGTTATTGAAAAAATGACATCCATTTGTCCAGCTTAAAATGCTTCTTATAGATCAACAGAAAAACATGGAGGTCTCATACA
CCACTGTAACTCACTGACTAGGGTGTGAAATTCTTCTTTTCCTGCCCTCTTAGAGGTCAACTTTGTTTAATCAGAACCAATGAGTTGATAAGCAACCTTG
TCCTCCCTTCTTAAAATTATGTTGAACATATTTACTTCAAGTCCTTAGAAAAAACCCAAAGTACAAATAAAAGAATTTTGAATTTTTTCCCAATTAAGAA
CTGGGGGGACCATTATCTTTGGTGTTATGTCTCTCCTATAATATTTGTGAATTGTACATTGTCCTTATCCTTTTATTTCCGCTACCCCAGGATTTTTCTT
TAGCTTCCTCTTATATATAATT
>LE_HBa0179J06_SP6_125396 (trimmed for quality and cloning vector)
AGAGAGCAAACCTGGGCTCTTGCAGCCTCGTCAGGAGCATGATGCCTCAGGAGCAAAATAACAACCACAGCTACTATCGCGTAGAAAAGCCTTGCTGTCC
TCTTAGGTCGCTCGCCTTCATCCTTCTGAGGCCAAACTTGGAACAAATCTTGCAGTGTTGCTTCCTCGGCCAGAATGTTGGGGAAAAACCATACACGCTT
CCCAAAAAGTACCCAAATAGCACCAAAGATCAAAGCTCTTACTGCAAGCACAAAATTGTTCTTTGTAATGGTGATTTATGCCCAATAGCAGACTCAAAAA
TATACATGACAAATTTGACGAGCATCCAGAATTACCGTTTTACAACAGGCATATTTTGCACAAATAAAGGAAATATTAGACACCACTTCCAGCAGAAATA
CTTTAATAAAATTTGTTGATGAGTGCCACTTAGGGATTTGGATGATTCAAGTGAAGGATAACAGAATATGGTTAGCACTTCCCACAGAGCTGTCATAGAC
ACAAAGCGAAAAGAATCTATCTGTCTATTGTAGAGTTCCTACGATAGTAAACAGTATTGTGAACTAACGAAAGTGTGCAGGCATTCAAAAATCCTAGTTA
TTGAAAAAATGACATCCATTTGTCCAGCTTAAAATGCTTCTTATA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.96834
Expected error %
0.8544
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g20920.1 Score 109 E Value 1e-24 Identity 21.70% Align. Length 239bp (37.05%) Frame 1
68416.m02644 translocation protein-related contains weak similarity to Drosophila translocation protein 1 (GI:558181) [Drosophila melanogaster]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAD38358.1| Score 110 E Value 3e-23 Identity 21.20% Align. Length 239bp (37.05%) Frame 1
translocation protein-related-like [Oryza sativa (japonica cultivar-group)] dbj|BAD37630.1| translocation protein-related-like [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAM65686.1| Score 109 E Value 6e-23 Identity 21.70% Align. Length 239bp (37.05%) Frame 1
unknown [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0179J06
Clone
Clone name
hba-179j6
LE_HBa0179J06
P179J06
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found