Clone Read LE_HBa0183N12_T7_125882

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0183N12_T7_125882
Primer
T7
ID from Seq. Facility
LE_HBa_183_N12-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
514 trimmed for vector and quality, 834 raw
Sequence
>LE_HBa0183N12_T7_125882 (raw untrimmed)
NCTTCGTTATTATATTCTGACCCGGGGGGTACTCTAGAGTCGACCTGCAGGCATGCAAGCTTGTTGTATCACAACAATTAGCTTTTATTAAAGGGAGACA
GATAATGGATGCAGTCCTCATAGCTAATGAAGTTGTAGATTCCAGGTTAGTCTAAAAAAATGACCAAGAAATGTATGCAAATTAGACATTGGGAAAGCAT
ATGACCATGTCAATTGGGACTTTCTTATGGGTATGCTAGAGAAGAATTCTGCGTACCTTCAGTGAACTTCTCAGTATTGGTAAATGGCTCTCCAACAGGA
TATTGTAGGTCACATAGAGGCTCAGGGTGATCCCTTATCACCCTTCCTTTTCATACTAGTCATGGAGGGACTCAACAATATGATCAAGAATGCATGCAAT
GAAGGGTGGCTGAGAGGTTTTGAAGTTGCTAGAGCTGGAAGGGAAAGTCTAGAGATCACTCATTTACAATATGCAGATGACGCCTTGATCTTTTGTGATG
CTGATAAAGACCACCTTAAAATATAAAGACTGACTCTAGTTACTTTTGAATTTTATATCTGGGCTACATGTCTACTACAGGAAAAGCTTCTTGGATCAGC
TATTGAAAATTATCTAATATGGAAATTTTAAAGTCTATTTTGTGAATTTATAGTACTTGTCTTCTCTTCCATATTATTTAGGTCTAGCCTTTTTGAGTGA
AAAAATTCCACGTTTATGAGATTTCTAAGAATGGGGTTGATTACATAATTGTAAAATAATGATTCACCTACCTCTGTAATTTCTTTATTTATCTTCTTTT
TTAGTAGGGCAAAACTTTCCTCTTGACCTTATAT
>LE_HBa0183N12_T7_125882 (trimmed for quality and cloning vector)
AGCTTGTTGTATCACAACAATTAGCTTTTATTAAAGGGAGACAGATAATGGATGCAGTCCTCATAGCTAATGAAGTTGTAGATTCCAGGTTAGTCTAAAA
AAATGACCAAGAAATGTATGCAAATTAGACATTGGGAAAGCATATGACCATGTCAATTGGGACTTTCTTATGGGTATGCTAGAGAAGAATTCTGCGTACC
TTCAGTGAACTTCTCAGTATTGGTAAATGGCTCTCCAACAGGATATTGTAGGTCACATAGAGGCTCAGGGTGATCCCTTATCACCCTTCCTTTTCATACT
AGTCATGGAGGGACTCAACAATATGATCAAGAATGCATGCAATGAAGGGTGGCTGAGAGGTTTTGAAGTTGCTAGAGCTGGAAGGGAAAGTCTAGAGATC
ACTCATTTACAATATGCAGATGACGCCTTGATCTTTTGTGATGCTGATAAAGACCACCTTAAAATATAAAGACTGACTCTAGTTACTTTTGAATTTTATA
TCTGGGCTACATGT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.960204
Expected error %
1.1642
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB75484.1| Score 75 E Value 1e-12 Identity 13.00% Align. Length 377bp (73.35%) Frame 3
putative protein [Arabidopsis thaliana] pir||T47495 hypothetical protein F9K21.130 - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAD20714.1| Score 74 E Value 2e-12 Identity 13.00% Align. Length 377bp (73.35%) Frame 3
putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] pir||G84649 hypothetical protein At2g25550 [imported] - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0183N12
Clone
Clone name
hba-183n12
LE_HBa0183N12
P183N12
Clone type
BAC
Contamination
none
Estimated length
76,770
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found