Clone Read LE_HBa0001H15_T7_127436

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0001H15_T7_127436
Primer
T7
ID from Seq. Facility
Le-HBa001_H15-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
783 trimmed for vector and quality, 1393 raw
Genbank Accession
DU068073
Sequence
>LE_HBa0001H15_T7_127436 (raw untrimmed)
TGACCTGGTACCGGGGGGATCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTGCTATAAGGATCATATATATATACATTTATATACACACACACCCTATA
TAATTTTAAAAAAATTAAAGTCAAAAAATAAATTTAAAACTAATTTACTCAATTTCTTTATTTAAGATAAAAGGTATATATATATGAACTCAAAGGTATA
TATATATGAACCATTTATATAACAATAACAGTCTATATGAAAATTACAAAAGTTCAAACTTTTTATGATGACAAATGTACACCATCCAGTTGCTATATTA
TAAAATTATATGCATGTGTATAGAAGTGGTCGCTCAGAAAATATAGATCTACTAGTAACATTTATTCTCCTTCGAATACTCCCTTCGATCCATTCAAAAA
TGGCAATTATTTTTTAAGTAAGAACTACAAGTGAACCCGATAAGGAAAAGTTCCTTACCTTATTTGTAATCCATACTAATTTGGTAGTTCAGCCTCCTAT
ATATAAAGATCTTTTAGTAAAACTATTTTGTTGGCTTGAAGGAAGACTTTGATTCTGACTTCGTAGAGCTTGTGTATTCATTAAACTATTTAATTTGGGC
GATTGATCGATCGAGAAGGAAGAAAATGGGGAAAGAATTGTTGGCTTTTGTTGTAATGGTGATTGTGCAATTAGGGTTTGCTGGAATGATAATAATATCA
AAGTTAGTGATGGATGGTGGCATGAATCCTTTTGTTCAGTCAGCTTATAGGCCTATTTTTGCAACTATCTCAATTGCTCCATTTGCTTTCTACTTCGAGA
GGTATCTCATGTTCGAGTCCTGAAAAATCACACATTATTCTTTTTAATAAGCTATATGTAACACAAGTACTCCATATTAAACCAATAGGGTGAGACAATT
TTTTTTAAAACTTTAAAAAAATACAAAATTAGGGGGAAATTTTACTAAAGAGGGGTAAATTTTTCATTACCTAATTTGTCCCTGCAATTGTAAATCCAAA
AAAAAAAAATTTTATTATAATTTGTCCGGGAAATCAAAAACAATAAACCCTTATTTTCCTTTTTTTTTTTTGACAGGGAAAAACAAAACCAAATTTGAAA
ATTCTTCCTTTTTTTTTCAAAATTTTTTGGGGTTCTATTTTTGGGGGTAAAAATTTTTTTTTTTTTATAATTTTGAAAAAAAAAAATCCCACGTTTTGGG
GGGGGGGCTGTGGGAAATTTCCAAAGGAGAAAAAATGGAAAAAAAAAATTTTTTTTTGGGGTTTTCCCCAATTAAAAAAAAAAAAAAGTTTTTAATAAAA
AAAACTTATTCCCCCCTTTATAACGGAAACAGAGTAAATAAAAAAAAAATCCCCCCTCTCTAAAATTTTTTGTTTTGTATTTTTATATATATT
>LE_HBa0001H15_T7_127436 (trimmed for quality and cloning vector)
AGCTTTGCTATAAGGATCATATATATATACATTTATATACACACACACCCTATATAATTTTAAAAAAATTAAAGTCAAAAAATAAATTTAAAACTAATTT
ACTCAATTTCTTTATTTAAGATAAAAGGTATATATATATGAACTCAAAGGTATATATATATGAACCATTTATATAACAATAACAGTCTATATGAAAATTA
CAAAAGTTCAAACTTTTTATGATGACAAATGTACACCATCCAGTTGCTATATTATAAAATTATATGCATGTGTATAGAAGTGGTCGCTCAGAAAATATAG
ATCTACTAGTAACATTTATTCTCCTTCGAATACTCCCTTCGATCCATTCAAAAATGGCAATTATTTTTTAAGTAAGAACTACAAGTGAACCCGATAAGGA
AAAGTTCCTTACCTTATTTGTAATCCATACTAATTTGGTAGTTCAGCCTCCTATATATAAAGATCTTTTAGTAAAACTATTTTGTTGGCTTGAAGGAAGA
CTTTGATTCTGACTTCGTAGAGCTTGTGTATTCATTAAACTATTTAATTTGGGCGATTGATCGATCGAGAAGGAAGAAAATGGGGAAAGAATTGTTGGCT
TTTGTTGTAATGGTGATTGTGCAATTAGGGTTTGCTGGAATGATAATAATATCAAAGTTAGTGATGGATGGTGGCATGAATCCTTTTGTTCAGTCAGCTT
ATAGGCCTATTTTTGCAACTATCTCAATTGCTCCATTTGCTTTCTACTTCGAGAGGTATCTCATGTTCGAGTCCTGAAAAATC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.932822
Expected error %
0.5671
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g09380.1 Score 66 E Value 2e-11 Identity 17.90% Align. Length 167bp (21.33%) Frame 2
68414.m01049 integral membrane family protein / nodulin MtN21-related similar to MtN21 GI:2598575 (root nodule development) from [Medicago truncatula]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_908553.1| Score 78 E Value 2e-13 Identity 20.00% Align. Length 179bp (22.86%) Frame 2
putative MtN21 [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAD86994.1| Score 75 E Value 1e-12 Identity 19.80% Align. Length 176bp (22.48%) Frame 2
putative MtN21 [Oryza sativa (japonica cultivar-group)] dbj|BAD86902.1| putative MtN21 [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0001H15
Clone
Clone name
hba-1h15
LE_HBa0001H15
C01HBa0001H15
P001H15
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
3 sequencing reads found