Clone Read LE_HBa0167C01_T7_12769

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0167C01_T7_12769
Primer
T7
ID from Seq. Facility
LE_HBa_167_C01-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 1689 raw
Sequence
>LE_HBa0167C01_T7_12769 (raw untrimmed)
GCGCCTATGTGAGATGTCTCTNCTCAGCCACCTCCAGACNTTCATCCTCGNTGTGTGTCGTACTCTCGCACCGTGTCTATCGCTCGAGCAGCTAGAGAGA
GTGCGGTCTGCGAGACCGANNGTNACNTCGCTGTACGAGTACACATGCTCTATGAATTTCTACGTGTGATTCCCCTACTTCTTCTTGGTCTCAGTTCTGT
GNCACAATACTATNTCAGCTTGCAGGACTAGTATGCGCGCATGTTTNATCGGCGCNTNTGTTATGGTGAGATNGCATGTTACTCATACTATCGAACTGTA
TAGCGCGAGAATGTGGTCTNTCACGCCGNCGACAGCATACCGCGATGGATGACAGTTAACTACACGTGGTCNCGTCCGTCCGGCGANTGCGTGCGTACAC
GCGTGANGATCGCTGCACTGAGTGGCGATGCTGGCTNGCTCGATTNCGCNACCCGGTCGAGATGTACTATGTGTGNCNGTCTATGACTCGATATTCGTTA
CTCGTCTGCCGNGCANTGGTACCAGTGAGAATGCACGTTGTACAGACTCGCAAGTATCACATCGCCATCCGTACGCGCATCTACACTNGCAGTTGCAATG
TACAGAGTGTCAGCGACCTACGTGTATTCGATGCTCCTGTAGCTTCAGGCTTCACCTCTCAANCGCGTCGCTGGACTCGTCGTCNAAGAGCTCGATCACG
CTTGTGTTACGGTGATATCATGTGTGGTGTGACTGCGGAGCGGGAAGCACACCTNTTCTGTCTGTGCTTCACCGTTATTGTAGTTTGTATCGATCTGAAG
CGACTGCGAGACTGGGCGACACTTGANATCTAGGCTGAGTATCATGTGGNCGTGAACTGTGTTGTCNGTGTACCCTCTCCTGCATCTCGCGTTATAGCTC
CTTGCTGGTNCCGCCGCGTNCTGAACTGACTCATGCAAGCCNTGCTAGTCCGTTATGCTACGACGCACTGGATGTTAGCCTGATCATCTGCTTCGTTCTC
TATGTCTTTTATTCTGACGCACCACCTGCATCATCATACATGTCATGTTATCTTATAACACTATTCTATTCTGATATTATATTGTCATATTTATTATGAT
GGTTAACAAGGGCCGNGCGTCGTANTTGTNTTTNTGTNTTGATATTATAATGTANTNAGAGAGATNTATATTTAATTTNTGTATGTATGATGAGTTGAAT
TTTATAAGGTGAAGTAAGTAAAATATNNGTTGTGNATTATTTTATGAANATNGTATTGTNATATGGTAGTATGTTANGGTTGGTGTAGATGATGTAGNTG
ATATAGTGGGNGTGTGAGTAGAAAGTGNGTAGTGTGTAATATGTGATTATNGTATATTGATTNTAATATTAGTGATGATTAGTTGTGATGATTATGTGTN
GNAGATTGATAATATGANATGATTAGTGTGATAATGTNGTGGATATATNGTTGAGGTATANTTGATGATGTATTATGAGTTATATGGGTAATGATGTGTG
GTAGTTGTTAGATGTATGTGTTGTGTGATGGNGAAGTGTGTGNGNTGTGTAGTTANGTAATTGTGTGAAGGTGATGTATNATGAGTAGATNANGTAAGAG
GNGATGATTGGTTTNTGAGATGGTGTGAATTGATGATGGGATTTGAGATATTAGTTGAGGAAAATATGATGATGTTGTGAANNTATAGA
>LE_HBa0167C01_T7_12769 (trimmed for quality and cloning vector)
G

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • High predicted error rate
  • Low complexity
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0167C01
Clone
Clone name
hba-167c1
LE_HBa0167C01
P167C01
Clone type
BAC
Contamination
none
Estimated length
120,226
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found