Clone Read LE_HBa0014I12_T7_129036

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0014I12_T7_129036
Primer
T7
ID from Seq. Facility
LE_HBa_014_I12-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
770 trimmed for vector and quality, 911 raw
Genbank Accession
DU052372
Sequence
>LE_HBa0014I12_T7_129036 (raw untrimmed)
CTGGGACCGTGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTGTACTCTTTACGTCGTCGGAAATTGTTTTTTTCTTCCCCAATCTTTTCTCGA
CTGCGGTCAAAGCGTCCGGATTAGATTGATCGAATCTGACAGCACCCCGCACCCGCACCAGAGTCGTGTCGAGATGGGTTCTCCTGCAAAAATAAAGAGT
CCGCGCAACTTAGGTTTCATAGGCAATGACATAAAGGGCTTCAAAAGCCCAAGCTGATTCCCAGTTGTTGAACTCTTGAGTAATTGCATTTGCAGCTTTT
TCAATAGCCTAGTAAGATTCAACCAAGTTTTTGAGTCGATAACTTTGTAAGGCACGGAATAGAGAGAGTAGTATATCTGCATACAGAGAGTATCTATAAG
GCTTTCTGATTACTCTTCTAGCATTCTAGAAAGTGATGAGCGCATCGAGTAGAGAGAGGAGAAAAGATGAAAAGATGAATTTGAAGAGATAGAGAAAATA
AGGCATAGAGACTTGGTGTCTTGAGATGAAACAACATCGGAGAAGTGATTTAGGAAGTCAGTAATACATCTGTGAGCTTCTCCCATGCTTAAATAGGCTG
AGGCCATTCTTTCGTCTTCAATCCAATTGAAGCTTTTGGTTTTGAGCAGAAACCCGCAGGGGTTTATGTCTTTCTCCGCGACTCACAACAATGACAACAC
CCTCTTTCTAAGGCTAAAGTTATCTTATTTCATACCCATTTATTGTGTATTTTCTTTTGAATCCAGGTGATGTTCTGTGAACTGTTGTAGGTCATTTCTT
GAGTTTGGGATGCTAGTGAAGAAATGTCAAGTGGAAGTATCGTGAAATGGTTGTAGTCCATTTTTCTTGAGTTTTGGGAGCCCAAGTGAAAGAACTTTTT
TCATTCAATTA
>LE_HBa0014I12_T7_129036 (trimmed for quality and cloning vector)
AGCTTTGTACTCTTTACGTCGTCGGAAATTGTTTTTTTCTTCCCCAATCTTTTCTCGACTGCGGTCAAAGCGTCCGGATTAGATTGATCGAATCTGACAG
CACCCCGCACCCGCACCAGAGTCGTGTCGAGATGGGTTCTCCTGCAAAAATAAAGAGTCCGCGCAACTTAGGTTTCATAGGCAATGACATAAAGGGCTTC
AAAAGCCCAAGCTGATTCCCAGTTGTTGAACTCTTGAGTAATTGCATTTGCAGCTTTTTCAATAGCCTAGTAAGATTCAACCAAGTTTTTGAGTCGATAA
CTTTGTAAGGCACGGAATAGAGAGAGTAGTATATCTGCATACAGAGAGTATCTATAAGGCTTTCTGATTACTCTTCTAGCATTCTAGAAAGTGATGAGCG
CATCGAGTAGAGAGAGGAGAAAAGATGAAAAGATGAATTTGAAGAGATAGAGAAAATAAGGCATAGAGACTTGGTGTCTTGAGATGAAACAACATCGGAG
AAGTGATTTAGGAAGTCAGTAATACATCTGTGAGCTTCTCCCATGCTTAAATAGGCTGAGGCCATTCTTTCGTCTTCAATCCAATTGAAGCTTTTGGTTT
TGAGCAGAAACCCGCAGGGGTTTATGTCTTTCTCCGCGACTCACAACAATGACAACACCCTCTTTCTAAGGCTAAAGTTATCTTATTTCATACCCATTTA
TTGTGTATTTTCTTTTGAATCCAGGTGATGTTCTGTGAACTGTTGTAGGTCATTTCTTGAGTTTGGGATG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.971912
Expected error %
0.1696
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g19560.1 Score 92 E Value 8e-26 Identity 58.40% Align. Length 382bp (49.61%) Frame 1
68415.m02285 proteasome protein-related weak similarity to 26S proteasome non-ATPase regulatory subunit 3 (26S proteasome regulatory subunit S3) (p58) (Transplantation antigen P91A) (Tum-P91A antigen) (Swiss-Prot:P14685) [Mus musculus]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAC43481.1| Score 92 E Value 4e-24 Identity 58.40% Align. Length 382bp (49.61%) Frame 1
unknown protein [Arabidopsis thaliana] ref|NP_179546.2| proteasome protein-related [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAD10155.1| Score 92 E Value 4e-24 Identity 58.40% Align. Length 382bp (49.61%) Frame 1
unknown protein [Arabidopsis thaliana] pir||C84578 hypothetical protein At2g19560 [imported] - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0014I12
Clone
Clone name
hba-14i12
LE_HBa0014I12
P014I12
Clone type
BAC
Contamination
none
Estimated length
60,256
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found