Clone Read LE_HBa0167F03_T7_12917

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0167F03_T7_12917
Primer
T7
ID from Seq. Facility
LE_HBa_167_F03-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
745 trimmed for vector and quality, 797 raw
Genbank Accession
DU031570
Sequence
>LE_HBa0167F03_T7_12917 (raw untrimmed)
CTCGGGTCCCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTACACTGTTCCATTGATGAACCATGAGGAGACCACAAGTTCAAAGAATAAG
GAACTGTAATTGTATTGTCCTTATCGAAAACCACGCCTTCGAATCCCCTTCTCTTAAGCTCAGCCCAATCAATATACCTTATATCTTGCACAAACACATG
TGGAATTGCCAAATGCTTGTCTTTACGAAAAATCCCAACAGAAAAAGAAACCCCCTCTACATTAATCCTCTGCCCCAATGCAGCTTTAATCCTTGCCCAC
CAACTGTTCGATCGAATGCCTGAATGAACAATCACTTCAACCCCCTGCTCTTTTACATCATTTCTGTAATGGGGTTTCTCTTTTTCAACAGAATAGTTCA
TTTCTTGCCAATATACATCTTTCTGTCTAGTTTGCTTCTCTTGTTCTTGGTGACAACTGTGTGTGTAAGTAACAAGTGTTTTCTTGAAATGAAGTGAATG
TTTGAAGGGAAATTTGTTAGGAATGTAATGGAAGTAAGTGTTCCATGGTGTAATTGAAGTAGATTGCATGATCAAGAATCCACCAAAAAAAATTTATAGT
TGTAGTTTGATTAAGGAAGTGTATGTATAATGTGTATCGATAAGGTAAAGTTTTTAATGGAATCTCCATGTTTGTACATCATTCTACCTTTGTCACAAAA
AACAGGGTGGGGTGACAAGAATGTTGTCTTTGGCTTTGTAGCCACTCAAATTGGAAGGACAAAACTCCTTTAATTTGGAAATTTTGATTATGTTTTG
>LE_HBa0167F03_T7_12917 (trimmed for quality and cloning vector)
AGCTTTACACTGTTCCATTGATGAACCATGAGGAGACCACAAGTTCAAAGAATAAGGAACTGTAATTGTATTGTCCTTATCGAAAACCACGCCTTCGAAT
CCCCTTCTCTTAAGCTCAGCCCAATCAATATACCTTATATCTTGCACAAACACATGTGGAATTGCCAAATGCTTGTCTTTACGAAAAATCCCAACAGAAA
AAGAAACCCCCTCTACATTAATCCTCTGCCCCAATGCAGCTTTAATCCTTGCCCACCAACTGTTCGATCGAATGCCTGAATGAACAATCACTTCAACCCC
CTGCTCTTTTACATCATTTCTGTAATGGGGTTTCTCTTTTTCAACAGAATAGTTCATTTCTTGCCAATATACATCTTTCTGTCTAGTTTGCTTCTCTTGT
TCTTGGTGACAACTGTGTGTGTAAGTAACAAGTGTTTTCTTGAAATGAAGTGAATGTTTGAAGGGAAATTTGTTAGGAATGTAATGGAAGTAAGTGTTCC
ATGGTGTAATTGAAGTAGATTGCATGATCAAGAATCCACCAAAAAAAATTTATAGTTGTAGTTTGATTAAGGAAGTGTATGTATAATGTGTATCGATAAG
GTAAAGTTTTTAATGGAATCTCCATGTTTGTACATCATTCTACCTTTGTCACAAAAAACAGGGTGGGGTGACAAGAATGTTGTCTTTGGCTTTGTAGCCA
CTCAAATTGGAAGGACAAAACTCCTTTAATTTGGAAATTTTGATT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.949663
Expected error %
0.80785
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g58830.1 Score 128 E Value 3e-30 Identity 20.90% Align. Length 272bp (36.51%) Frame 2
68416.m06557 haloacid dehalogenase (HAD) superfamily protein contains TIGRfam TIGR01668: HAD superfamily (subfamily IIIA) phosphatase, TIGR01668 and TIGR01662: hydrolase, HAD-superfamily, subfamily IIIA
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB88300.1| Score 128 E Value 1e-28 Identity 20.90% Align. Length 272bp (36.51%) Frame 2
putative protein [Arabidopsis thaliana] pir||T49166 hypothetical protein T20N10.180 - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAO44085.1| Score 128 E Value 1e-28 Identity 20.90% Align. Length 272bp (36.51%) Frame 2
At3g58830 [Arabidopsis thaliana] ref|NP_191442.2| haloacid dehalogenase (HAD) superfamily protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0167F03
Clone
Clone name
hba-167f3
LE_HBa0167F03
P167F03
Clone type
BAC
Contamination
none
Estimated length
35,579
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found