Clone Read LE_HBa0014N24_SP6_129299

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0014N24_SP6_129299
Primer
SP6
ID from Seq. Facility
LE_HBa_014_N24-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
587 trimmed for vector and quality, 854 raw
Genbank Accession
DU052586
Sequence
>LE_HBa0014N24_SP6_129299 (raw untrimmed)
TGGTTTCTTTGATGCGGTCGGCGGGTTTAAAATGTTCATATCTTTTGTACAATATTAACTGCCAGCACAATGGATCCGGGAGGTCTTTTTTTTATCCTAT
TTAATTTCCTGATTATATAATATAATAAAAAAATATATAAATTTTATTTCTGATTTGTGTGATATTTTTTTTAAAAATATTGAGCAGGTCATATACTTCC
GTTGGCGTATGCGATAGTAGATTCTGAAAATGATGCTTCATGGACTTGGTTCTTTGAGCAGTTTAAGGAAGTATATGGAGTTAGACAAAATATGTGTTTT
ATGTCGGACCGAAATGAAAGCATATGAAAAGGACTGCTAATGTATATCCTGAATCAGAACATTATGCATGCATATGTCATCTATCAATGAATGTGTTGAA
GAATTTCAATAGAAATACTGAAGATTTGAAGATTTTGTTCTTTACATTGGCAAAAGCTTATACAAAACAACAGTTTGAGACAATTACGGAAAGAATAGAT
CAGGTAGATACGCGCATAGACTATACTTGTTTGATATTGGTTATAACAAATGGTCAATAGCTTACTCGAATTGTAAGAGCACATGGACCATGACTTCAAA
CATCGCGGAGTCATTGAATAATGTTAACAGGTTAGCAAGGAGGTTACCGGTGATTTCACTTCTTGAGTTTATGAGGGGTAACGATTTAGAGGTGGATTTA
CAAGCATAATGAGGGAGGCTGATTAAGAACAACATCTGAATCTGACAAAAAAATATTAATATTTTATCCACAGAAAAAGTATTGCGTTTGTCGGTGCAAC
ATGAAGGGGAATATGGTTTTCCCAATTTTTGTATTTTTTTACCTTTCAAAAAAA
>LE_HBa0014N24_SP6_129299 (trimmed for quality and cloning vector)
TATTAACTGCCAGCACAATGGATCCGGGAGGTCTTTTTTTTATCCTATTTAATTTCCTGATTATATAATATAATAAAAAAATATATAAATTTTATTTCTG
ATTTGTGTGATATTTTTTTTAAAAATATTGAGCAGGTCATATACTTCCGTTGGCGTATGCGATAGTAGATTCTGAAAATGATGCTTCATGGACTTGGTTC
TTTGAGCAGTTTAAGGAAGTATATGGAGTTAGACAAAATATGTGTTTTATGTCGGACCGAAATGAAAGCATATGAAAAGGACTGCTAATGTATATCCTGA
ATCAGAACATTATGCATGCATATGTCATCTATCAATGAATGTGTTGAAGAATTTCAATAGAAATACTGAAGATTTGAAGATTTTGTTCTTTACATTGGCA
AAAGCTTATACAAAACAACAGTTTGAGACAATTACGGAAAGAATAGATCAGGTAGATACGCGCATAGACTATACTTGTTTGATATTGGTTATAACAAATG
GTCAATAGCTTACTCGAATTGTAAGAGCACATGGACCATGACTTCAAACATCGCGGAGTCATTGAATAATGTTAACAGGTTAGCAAG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.938684
Expected error %
0.4113
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAV31178.1| Score 98 E Value 8e-57 Identity 71.20% Align. Length 450bp (76.66%) Frame 1
putative transposase [Solanum tuberosum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAD24658.1| Score 55 E Value 1e-16 Identity 36.80% Align. Length 444bp (75.64%) Frame 1
Mutator-like transposase [Arabidopsis thaliana] pir||B84469 Mutator-like transposase [imported] - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0014N24
Clone
Clone name
hba-14n24
LE_HBa0014N24
P014N24
Clone type
BAC
Contamination
none
Estimated length
112,425
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found