Clone Read LE_HBa0017F18_SP6_130439

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0017F18_SP6_130439
Primer
SP6
ID from Seq. Facility
LE_HBa_017_F18-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
696 trimmed for vector and quality, 945 raw
Genbank Accession
DU049663
Sequence
>LE_HBa0017F18_SP6_130439 (raw untrimmed)
TTCCAGGGTCTTTTCGAGAAACTAGGGAGTTTCTCGACTTGGAGAAACTAGGAGCCTCACCTTTTGAGAAACTAGGGATTTCAGGTTTGGAAAAACTAGG
TGTCTCAGGATTTGAGAAACTAGATGTCTTAGGGTTTGAGAAACTAGGAGTTTTTGACTTTGAGAAACTAGGAGTCTCAGGCTTTGAAAAAGTAGGAATC
TCTGGTTTTGAGAAAGTAGGGGTTTCAGGTTTTGAAAAGCTAGGTGACTTAGACTTTGAGAAACTAGGTGTTTCAGGTTTTGAGAAACTAGGGATGTCAG
GCTTTGCAAGACTAGGGGTCTCAGGCTTTGAAAGACTAGGTGAACTGGAGAAACTTAGGGTAGTTGGCGTTGAGAAACTAGGGGTCTCAGGATTTGTAAA
ACTAGAAATTTTGAAATTTGAGAAACTAGGAGTCTCGGGCTTTGAGAACCCTGGTGTTCCAGGTTTAGAGAAACTAGGATTCTCTGGCTTTGAGAAACTA
GGTGTTTCAGGTTTAGAAAAACTAGGGTTCTCAGGCTTTGAAAGACCGGGGGAATTGGAGAAACTTGGGGTAGCAGGCATTAAGAAAGTAGGGGTAGTGG
GCGTCGAGAAACTTGGGACAACGGATGTTGAAAAACTAGGATTAGCGGGTGCTGAAAAACTTGGGGTCTGAAGAAGGCGACTTGCCGTTATAGTAGTTAT
CATGTCGTCATGCATAAAGTAGATAAAAGCAAACAATAAGATGGAGGAAAAGTTGTAGGGCCAAGCCATTTTTTGTGCTGAGACAAGAAACTTAGAGAAA
AATATTGGTAAAGGAAGAAAAATTTTTGATATTTTAATTGTTTTTCATTAACCTTAGATAGATTTTAAAAGGATGGAAAAGGGAAGATTTCCATACTTGA
TAGGGTAAGTTTGCCTATTTTACTGCCAATATTATATTTTTAGAA
>LE_HBa0017F18_SP6_130439 (trimmed for quality and cloning vector)
GACTTGGAGAAACTAGGAGCCTCACCTTTTGAGAAACTAGGGATTTCAGGTTTGGAAAAACTAGGTGTCTCAGGATTTGAGAAACTAGATGTCTTAGGGT
TTGAGAAACTAGGAGTTTTTGACTTTGAGAAACTAGGAGTCTCAGGCTTTGAAAAAGTAGGAATCTCTGGTTTTGAGAAAGTAGGGGTTTCAGGTTTTGA
AAAGCTAGGTGACTTAGACTTTGAGAAACTAGGTGTTTCAGGTTTTGAGAAACTAGGGATGTCAGGCTTTGCAAGACTAGGGGTCTCAGGCTTTGAAAGA
CTAGGTGAACTGGAGAAACTTAGGGTAGTTGGCGTTGAGAAACTAGGGGTCTCAGGATTTGTAAAACTAGAAATTTTGAAATTTGAGAAACTAGGAGTCT
CGGGCTTTGAGAACCCTGGTGTTCCAGGTTTAGAGAAACTAGGATTCTCTGGCTTTGAGAAACTAGGTGTTTCAGGTTTAGAAAAACTAGGGTTCTCAGG
CTTTGAAAGACCGGGGGAATTGGAGAAACTTGGGGTAGCAGGCATTAAGAAAGTAGGGGTAGTGGGCGTCGAGAAACTTGGGACAACGGATGTTGAAAAA
CTAGGATTAGCGGGTGCTGAAAAACTTGGGGTCTGAAGAAGGCGACTTGCCGTTATAGTAGTTATCATGTCGTCATGCATAAAGTAGATAAAAGCA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.884928
Expected error %
0.2815
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAE56173.1| Score 81 E Value 3e-14 Identity 31.80% Align. Length 509bp (73.13%) Frame 2
Hypothetical protein CBG23793 [Caenorhabditis briggsae]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAE75076.1| Score 75 E Value 2e-12 Identity 27.90% Align. Length 494bp (70.98%) Frame 2
Hypothetical protein CBG22994 [Caenorhabditis briggsae]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0017F18
Clone
Clone name
hba-17f18
LE_HBa0017F18
P017F18
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found