Clone Read LE_HBa0019A06_SP6_131711

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0019A06_SP6_131711
Primer
SP6
ID from Seq. Facility
LE_HBa_019_A06-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
614 trimmed for vector and quality, 868 raw
Genbank Accession
DU048808
Sequence
>LE_HBa0019A06_SP6_131711 (raw untrimmed)
TGGTAATGGTCATCTAGTCCTTNCANCATNGAGAATGGTATTGAGTTTGTTGACAATGTCGAACCGTCAATCACAACTTTTTTTTCCCTTGAATCTAGCT
TTTGGGATCTCTAATCTGCTAGATAGAGTTACTCTCATGATGACTTGTACTAAGCCGTAAAGTCATTCTCTTATATGATCTTATAACTTCCTCTCTAGTT
AAGGCTTTTTGTAAGTGGATCCGACACATTATTCTTTGAATTTACATAGTCAATTTGATAATTCCACTAGAGAGTAGTTTTCTAACGGTATCATGTCTAT
GTCGTATATGACGAGACTTTCTATTATACGTCATGCTCCATGCCCTACCTACTGCATCTTCATTGTGAAAGTGTATGCATACTAATGCCAATGGTTTGGG
CAAAAATAGAATATCTATCAAGAAATTACGGAGTCTTTCAATTTATTCACCTACCATATCTAGAGAACCTAACTCAAAGATCATTGTAGAGCTAGTGATA
CATAACTCTATTGAAATATTTCTAAGAGACTTCTCCTCTACCAATAGTAAATACACATCCACTTGTGAATTTTACTTCATTCGTCCGATAATTTATTTGG
CATCATAATATCTTTCAATATTGTTGGATATAGTTATAATACAAGACATAATTTTAAGTATTATTTTAAATTACTCCCGAAACTGTATTTATTTTCATCC
TAATGAATTTATTTGGGATTACTTGGGAAATCGACCCAGTTTAAAATAACCAAAGGCTATATCTGAATCGCCCACACTAATATGATAATACATTCATGCT
TCCCAAAAACTCTAACCCCAAACCAATTTTGAAAGTCCCTTTTTTTTTTTACCCCCTTTTGAAAATGA
>LE_HBa0019A06_SP6_131711 (trimmed for quality and cloning vector)
TTGAGTTTGTTGACAATGTCGAACCGTCAATCACAACTTTTTTTTCCCTTGAATCTAGCTTTTGGGATCTCTAATCTGCTAGATAGAGTTACTCTCATGA
TGACTTGTACTAAGCCGTAAAGTCATTCTCTTATATGATCTTATAACTTCCTCTCTAGTTAAGGCTTTTTGTAAGTGGATCCGACACATTATTCTTTGAA
TTTACATAGTCAATTTGATAATTCCACTAGAGAGTAGTTTTCTAACGGTATCATGTCTATGTCGTATATGACGAGACTTTCTATTATACGTCATGCTCCA
TGCCCTACCTACTGCATCTTCATTGTGAAAGTGTATGCATACTAATGCCAATGGTTTGGGCAAAAATAGAATATCTATCAAGAAATTACGGAGTCTTTCA
ATTTATTCACCTACCATATCTAGAGAACCTAACTCAAAGATCATTGTAGAGCTAGTGATACATAACTCTATTGAAATATTTCTAAGAGACTTCTCCTCTA
CCAATAGTAAATACACATCCACTTGTGAATTTTACTTCATTCGTCCGATAATTTATTTGGCATCATAATATCTTTCAATATTGTTGGATATAGTTATAAT
ACAAGACATAATTT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.942276
Expected error %
0.0309
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU89783.1| Score 112 E Value 9e-24 Identity 14.90% Align. Length 494bp (80.46%) Frame 2
putative retrovirus-related pol polyprotein-like [Solanum tuberosum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38766.1| Score 91 E Value 2e-17 Identity 13.00% Align. Length 491bp (79.97%) Frame 2
putative polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0019A06
Clone
Clone name
hba-19a6
LE_HBa0019A06
P019A06
Clone type
BAC
Contamination
none
Estimated length
63,087
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found