Clone Read LE_HBa0019E05_SP6_131901

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0019E05_SP6_131901
Primer
SP6
ID from Seq. Facility
LE_HBa_019_E05-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
654 trimmed for vector and quality, 863 raw
Sequence
>LE_HBa0019E05_SP6_131901 (raw untrimmed)
AAATTTTTTTACTCACCAACCCCGAATNCAAAATTCCCCTAATTTAACATCATTTATTACTTAATTTGAATTAAAATTTAATGATAAATATTATAAATTA
ATGATTAAAAATAATTTTAAAAAATATAAAAATAATCATTTATATATTTAAAATTTATACAAAAAATATTATAAATTACAATATTAATGATTAAAAATAT
CTTTAAAACATACAAAAATTTACAGTCAAAGAAATACTGAATTGACTAGTTTTAAATATAACTATCTTTTCAATCTCCTAAACCATTCGTTTTTTTCTTT
GTTTTTCTTCTATCATCCATCAAATACCTATCATATTAAGATATTTTAAGATAAATTCTTGGAGTGTTAATCTAATTCTGAATTTAACATACGATATTTT
TATAAATATTATTGTTATTATTGTTGTTGTTATTGTTATTGTTGTTGTTGTTGTAATTATTATTATTAATTATTATTATTATTATAATTATAATTATTAT
TATTATTATTATATAAAAGTAACTCTATTTCAAAAATTATCACACAATTTTTTTAGAGTGTTTTTCTTAACCACTTTAAAAGTTATTTTGGCACTTAAAA
GTCATTTAACGTTGAGTCTTTTTTCAATTTTTTTTAACTAAGTAAACTAAAACATAATTTTCACATAAATTTTAGCATTTTATACCGAAAATATTATATA
AGCTCCAATACAAGTTAATTAATTACTCCATATCTTTTTCTTACATAGCCCTATTGACTTGAGCACCCCTTTTTTTTTAATAAACAAAATGCTTATTTTA
CCTAAATAAATTTTATTTATGAATGCTTTGAAATTTTTAAATTCCATTTTTTTTTACTTTTAA
>LE_HBa0019E05_SP6_131901 (trimmed for quality and cloning vector)
ATTTAACATCATTTATTACTTAATTTGAATTAAAATTTAATGATAAATATTATAAATTAATGATTAAAAATAATTTTAAAAAATATAAAAATAATCATTT
ATATATTTAAAATTTATACAAAAAATATTATAAATTACAATATTAATGATTAAAAATATCTTTAAAACATACAAAAATTTACAGTCAAAGAAATACTGAA
TTGACTAGTTTTAAATATAACTATCTTTTCAATCTCCTAAACCATTCGTTTTTTTCTTTGTTTTTCTTCTATCATCCATCAAATACCTATCATATTAAGA
TATTTTAAGATAAATTCTTGGAGTGTTAATCTAATTCTGAATTTAACATACGATATTTTTATAAATATTATTGTTATTATTGTTGTTGTTATTGTTATTG
TTGTTGTTGTTGTAATTATTATTATTAATTATTATTATTATTATAATTATAATTATTATTATTATTATTATATAAAAGTAACTCTATTTCAAAAATTATC
ACACAATTTTTTTAGAGTGTTTTTCTTAACCACTTTAAAAGTTATTTTGGCACTTAAAAGTCATTTAACGTTGAGTCTTTTTTCAATTTTTTTTAACTAA
GTAAACTAAAACATAATTTTCACATAAATTTTAGCATTTTATACCGAAAATATT

This is probably not a useful sequence.

Problems:
  • Low complexity
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.801321
Expected error %
0.1526
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0019E05
Clone
Clone name
hba-19e5
LE_HBa0019E05
C06HBa0019E05
P019E05
Clone type
BAC
Contamination
none
Estimated length
81,853
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found