Clone Read LE_HBa0019H22_SP6_132079

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0019H22_SP6_132079
Primer
SP6
ID from Seq. Facility
LE_HBa_019_H22-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
584 trimmed for vector and quality, 851 raw
Genbank Accession
DU049106
Sequence
>LE_HBa0019H22_SP6_132079 (raw untrimmed)
AATTTGCCTCACAAAATGCCTCTACCTGCCTAGTAACAATGTACCANTCCTGCGTGCTGAAAATCCGGATAAGAGTACCCTTGGTACTTGCTGTTGCCAG
CACATTCCCCTCATGACTAAGAGCAAAAGATGCAATCCTAGAATCATGTGCAAAGATAAACTTAGTCCTTTTTGATGTGAATTGATCAACCCGAACTTGA
CCATTTTGCAACCCAGGGCACACCAGCACAGGTGATACAGCCGTTTGTGAAATTTCACAGAGTCCTTTTGGGTTTGACATTGTCTCAATCTGGTGGACGA
GCTTCAGATCAGCAAAATTATATATAAATATCTTCTGCTCAAGTATAACTACAATGCAGTCCCGTCGAAGCCGCACACCGCGCACAGCCGATCTGAAACG
GAGCTCTCCGATGCAGCGGTTCTGATGGTCATCCCAAATTATGACCTTGTTTCGATGATATTGTGGATTATCTCCATTTCCTACAAAGACTAGTATATTG
CTTCTGAAGAGCATCTCAACAATTCCAATACCACCTCCATTATCAAAGTATCGTCGAAACATCTCACAGTAAGGATCACAACTATAGACACTAATGCCGC
AATCAGTGCCAATGGCAAAACAACTACCATTTTGATTGAAGGAAACACGGTATAGAGTTGAAATTGATCTATTGATGAAGCCATGGGTAGGGCATGGATA
AAGGTGACTCCTGCTTAAGATCATTATCCTTTCTGTACAACAACCGCTTCCTTGGGCTGAAGCTGTTTTTTGTGTTGTTTCATCTAGTTGCCCCAAAAAA
AACTTGAACCTTTGGTGAACAACCAATAATTTTGGGTGGCGTAACGGGGGG
>LE_HBa0019H22_SP6_132079 (trimmed for quality and cloning vector)
CTGCGTGCTGAAAATCCGGATAAGAGTACCCTTGGTACTTGCTGTTGCCAGCACATTCCCCTCATGACTAAGAGCAAAAGATGCAATCCTAGAATCATGT
GCAAAGATAAACTTAGTCCTTTTTGATGTGAATTGATCAACCCGAACTTGACCATTTTGCAACCCAGGGCACACCAGCACAGGTGATACAGCCGTTTGTG
AAATTTCACAGAGTCCTTTTGGGTTTGACATTGTCTCAATCTGGTGGACGAGCTTCAGATCAGCAAAATTATATATAAATATCTTCTGCTCAAGTATAAC
TACAATGCAGTCCCGTCGAAGCCGCACACCGCGCACAGCCGATCTGAAACGGAGCTCTCCGATGCAGCGGTTCTGATGGTCATCCCAAATTATGACCTTG
TTTCGATGATATTGTGGATTATCTCCATTTCCTACAAAGACTAGTATATTGCTTCTGAAGAGCATCTCAACAATTCCAATACCACCTCCATTATCAAAGT
ATCGTCGAAACATCTCACAGTAAGGATCACAACTATAGACACTAATGCCGCAATCAGTGCCAATGGCAAAACAACTACCATTTT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.974958
Expected error %
0.0236
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g62770.2 Score 281 E Value 1e-76 Identity 22.90% Align. Length 572bp (97.95%) Frame 2
68416.m07051 transport protein-related weak similarity to Gsa12p [Pichia pastoris] GI:18307769; contains 1 WD-40 repeat (PF00400); putative proteins - different species
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g62770.1 Score 281 E Value 1e-76 Identity 22.90% Align. Length 572bp (97.95%) Frame 2
68416.m07052 transport protein-related weak similarity to Gsa12p [Pichia pastoris] GI:18307769; contains 1 WD-40 repeat (PF00400); putative proteins - different species
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB83127.1| Score 281 E Value 6e-75 Identity 22.90% Align. Length 572bp (97.95%) Frame 2
putative protein [Arabidopsis thaliana] ref|NP_974479.1| transport protein-related [Arabidopsis thaliana] pir||T48066 hypothetical protein F26K9.200 - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_567132.1| Score 281 E Value 6e-75 Identity 22.90% Align. Length 572bp (97.95%) Frame 2
transport protein-related [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0019H22
Clone
Clone name
hba-19h22
LE_HBa0019H22
C08HBa0019H22
P019H22
Clone type
BAC
Contamination
none
Estimated length
23,943
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found