Clone Read LE_HBa0019J05_SP6_132141

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0019J05_SP6_132141
Primer
SP6
ID from Seq. Facility
LE_HBa_019_J05-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
618 trimmed for vector and quality, 874 raw
Genbank Accession
DU049155
Sequence
>LE_HBa0019J05_SP6_132141 (raw untrimmed)
AAATTTGTAAACCCTCCCTTTTACTTCTTTATCGGTTGCTTACGGTCTGCGTTCGTTTCATACATGAAAAACCTCCTGGCTTGATGAGTGTATAGAGAAT
AGACTTTTGATATAAAATTCTCTTCGAAGCAGCTTCCATTTCACACTCACATAAGTGATTTCTAACTGTGTGATCTCGTAGATACACTATTTGGTCAAAT
CTGCCAAACTTTAACAAATCATTAAAAACATTAAAATTTATTACCTCACTAACAACCCTTAAAGTCTTAACTTTGTTTCTGAACATTGTCTTCATCATAA
GAATGAATTGAGTTGATTGACAATATTGAACCGTCAGCCACAACTTTGTTTTTCTCCTTGAATCTAGGTCTTGGGATCTCCAGTCTGCTAGATAGAGTTA
ATGTCATGCTGACTTGTCCTGAGACGTATATCCATTCCCTTATATGATCTTTAAACTTCTTCTCTCACTAGGCCTTTCGCTAGTGTATCTGACACATTAT
CACTTGACTTTACATACTCAATTGTCATTATTCCACTAGAGAGCAGTTGTCTTACGGTGTTATGTCTCCGTCGTATAATGACAAGACTTTCCGTTGTACA
GGACGCTCTCTGCCCTACCTATTTTATTCTTGACTATCGCAATGTATGCAAATAGGTCCAATAGGTTTGGTCCAGAATGGAATATCCTCTAAGAAACTCC
AAAGACATTTTAGCTTCTTCACCAGCCTTATTCAAAAAAATTAATTCAGGTTTCCATTGTTGGAGCAAGCAATACCTGGTGTGTTTGGGATTATTTCCCA
CAAAATTTCTTCCCCCACTCAAGTAAAGAAACCCCATAACCACCTTGGTGGTATTTTTACCGGAATTTTTACTT
>LE_HBa0019J05_SP6_132141 (trimmed for quality and cloning vector)
GTTTCATACATGAAAAACCTCCTGGCTTGATGAGTGTATAGAGAATAGACTTTTGATATAAAATTCTCTTCGAAGCAGCTTCCATTTCACACTCACATAA
GTGATTTCTAACTGTGTGATCTCGTAGATACACTATTTGGTCAAATCTGCCAAACTTTAACAAATCATTAAAAACATTAAAATTTATTACCTCACTAACA
ACCCTTAAAGTCTTAACTTTGTTTCTGAACATTGTCTTCATCATAAGAATGAATTGAGTTGATTGACAATATTGAACCGTCAGCCACAACTTTGTTTTTC
TCCTTGAATCTAGGTCTTGGGATCTCCAGTCTGCTAGATAGAGTTAATGTCATGCTGACTTGTCCTGAGACGTATATCCATTCCCTTATATGATCTTTAA
ACTTCTTCTCTCACTAGGCCTTTCGCTAGTGTATCTGACACATTATCACTTGACTTTACATACTCAATTGTCATTATTCCACTAGAGAGCAGTTGTCTTA
CGGTGTTATGTCTCCGTCGTATAATGACAAGACTTTCCGTTGTACAGGACGCTCTCTGCCCTACCTATTTTATTCTTGACTATCGCAATGTATGCAAATA
GGTCCAATAGGTTTGGTC

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.952218
Expected error %
0.1657
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAW28564.1| Score 90 E Value 4e-17 Identity 15.70% Align. Length 395bp (63.92%) Frame 1
putative gag-pol polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38766.1| Score 89 E Value 8e-21 Identity 45.50% Align. Length 531bp (85.92%) Frame 3
putative polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0019J05
Clone
Clone name
hba-19j5
LE_HBa0019J05
P019J05
Clone type
BAC
Contamination
none
Estimated length
133,130
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found