Clone Read LE_HBa0022G07_T7_133538

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0022G07_T7_133538
Primer
T7
ID from Seq. Facility
LE_HBa_022_G07-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
771 trimmed for vector and quality, 992 raw
Genbank Accession
DU041203
Sequence
>LE_HBa0022G07_T7_133538 (raw untrimmed)
GTGATCCTGGTACCGGGGGTATCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGTCTCTCTTTTCTGGATCAACATGTACATAAGCAGTGCAACCAAAAG
TCCTCAAGTGTGAGTACTTGAGTTCTTTTCCTGTCCACACCTCCTCTGGAATCTTGAACCCTAAAGAAACTGATGGTCCCCTATTGATCAAGTATGCAGA
TGTGCTCACAGCATCCTCCCAAAGTGTTTTGGGCAGCCCACACTGTATCCTCATACTCCTTGCACATTCAATTAATGTTCTGTTCATCCTCTCATCAATT
CCATTCTGCCTTGCCTTACCAAGAACTGTTCTCATCAATCTGATTCCCTCAGCTGCACATAATGCCTTGAACTCTGATTTTTCATACTCTTCTCCATCGT
CAAACCTTAGGCATTTGACTTCCAAACTGGTCTGATTCTCAACTTCAACTTTCCACTTCTTGAAAGTTGCAAACACATCTGACTTATGCTTCAAGAAGTA
AACCCATACCTTCCTGCTGAAATCATCAATGAAGGTAACATAGAATCTGGATCCTCCAAGTGATGATACTGGAGATGGTCCCCAAACATCTGTATGGACC
ATTTCCAACCGCACTTTCTTTGGCTCTCTAGGAATCTTTGTGAAGCTTACTCTTTTCTGTTTGCCCATAACACAGCTCTCGCAAAGACCCATATCAACAG
ACTTCAGACGCTCTAATGCTCCTTTTGTAACCCATATCTTCATTCCTTTAGTATTCATGTGTCCAAGTCTGTTGTGCCACAGATATGATCCGGAAGCACC
TTTAGCAACAACGGCCATGTTTATACACCCTTGTAGGGTGTACAAGGTTCCAGATTTGGTTCTACGAGCTACTACCTAGCACCTTCACAATCTCCATGAA
CCTTTTCCAAACCCTACGGATATCCTGTGCTATTCCATTGGACCAAAAAGATCAAATTTTCTTTTTTTAGGATATTTCTAATTCCTCTATTG
>LE_HBa0022G07_T7_133538 (trimmed for quality and cloning vector)
AGCTTGTCTCTCTTTTCTGGATCAACATGTACATAAGCAGTGCAACCAAAAGTCCTCAAGTGTGAGTACTTGAGTTCTTTTCCTGTCCACACCTCCTCTG
GAATCTTGAACCCTAAAGAAACTGATGGTCCCCTATTGATCAAGTATGCAGATGTGCTCACAGCATCCTCCCAAAGTGTTTTGGGCAGCCCACACTGTAT
CCTCATACTCCTTGCACATTCAATTAATGTTCTGTTCATCCTCTCATCAATTCCATTCTGCCTTGCCTTACCAAGAACTGTTCTCATCAATCTGATTCCC
TCAGCTGCACATAATGCCTTGAACTCTGATTTTTCATACTCTTCTCCATCGTCAAACCTTAGGCATTTGACTTCCAAACTGGTCTGATTCTCAACTTCAA
CTTTCCACTTCTTGAAAGTTGCAAACACATCTGACTTATGCTTCAAGAAGTAAACCCATACCTTCCTGCTGAAATCATCAATGAAGGTAACATAGAATCT
GGATCCTCCAAGTGATGATACTGGAGATGGTCCCCAAACATCTGTATGGACCATTTCCAACCGCACTTTCTTTGGCTCTCTAGGAATCTTTGTGAAGCTT
ACTCTTTTCTGTTTGCCCATAACACAGCTCTCGCAAAGACCCATATCAACAGACTTCAGACGCTCTAATGCTCCTTTTGTAACCCATATCTTCATTCCTT
TAGTATTCATGTGTCCAAGTCTGTTGTGCCACAGATATGATCCGGAAGCACCTTTAGCAACAACGGCCATG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.952659
Expected error %
0.5544
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAA32025.1| Score 247 E Value 2e-64 Identity 16.40% Align. Length 731bp (94.81%) Frame 1
unnamed protein product [Nicotiana tabacum] sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Contains: Protease ; Reverse transcriptase ; Endonuclease]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|XP_470868.1| Score 239 E Value 4e-62 Identity 16.70% Align. Length 722bp (93.64%) Frame 1
Putative retroelement pol polyprotein [Oryza sativa] gb|AAK52561.1| Putative retroelement pol polyprotein [Oryza sativa]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0022G07
Clone
Clone name
hba-22g7
LE_HBa0022G07
P022G07
Clone type
BAC
Contamination
none
Estimated length
86,983
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found