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Clone Read LE_HBa0023C09_SP6_134117

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0023C09_SP6_134117
Primer
SP6
ID from Seq. Facility
LE_HBa_023_C09-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
667 trimmed for vector and quality, 902 raw
Genbank Accession
DU044176
Sequence
>LE_HBa0023C09_SP6_134117 (raw untrimmed)
ACCCAAAAAGCAAGACGAAGGTTNGTACGCCTTGTCTCCTAAGATAATGAATNAGCGCTTGAGAGTGGAACACACAAAATAAAGCTTTCTTCGAAAATTA
AGATATGATCGTACCAAAACTCCCTGAGGAACTGCTGAATGATGTGAAACTGCAAACTCCCAGTCTGATAATTGGTTCTCAGATGGTAAATTACCATACA
CTGCATAATTCACGTAACGCCATTGATAAAATATGAACCATCTTATGAATCAAAACTGTGAAGTAACATAAACCAGCTTCTGAAGCAGAACCTTCAGAGC
AACGAACTCATTTCAAGATAACAAGAACATTGACTGGTATTTACAAAAAGCAGTTGAAGAAATCCAATGATGCATTAGAAGTGAGGCTTAAGAATCTGAT
GAAGTAAATTTCATTATTAACACTTACTTAAAAGATAAGCCACTTCTAAGAAGGAACTTCTCTCAGCCAACTCTTCAATCGGGTAACCTCGATACCTGAG
AATCCCTGCATCACCATCTATGTAACATATTGATGAACGAACGGGTGCAGTGTTGAGATAGCCCGGATCATAAAGCTTGAGACCCTTATCATTGTATCCA
GTAGATATCTATATAACAAATAACAATTACAGTATATATAAAAAAAATAAAATAATAATCAAAACAAATAGTACTAAACTACACGACGCAAACAAGCATA
GAAGCTTACTTTCTTAAAGTCGGTAGCTTTAACAGTTTCCTTCCTCGGTAACCGGAACCTGATACTTCTTACCGGTCCTCTCATCATTGATTGTCAAGGC
GCCTTTCAAAATAAGGGGGCGGGCACCCCGGCGCCGTTGGTGCAGATACAAAAGAAGTTTCCAAACCCTGGGGAGGGAGGGGGAATTAATCGGCGGGCCA
AT
>LE_HBa0023C09_SP6_134117 (trimmed for quality and cloning vector)
TCTCCTAAGATAATGAATNAGCGCTTGAGAGTGGAACACACAAAATAAAGCTTTCTTCGAAAATTAAGATATGATCGTACCAAAACTCCCTGAGGAACTG
CTGAATGATGTGAAACTGCAAACTCCCAGTCTGATAATTGGTTCTCAGATGGTAAATTACCATACACTGCATAATTCACGTAACGCCATTGATAAAATAT
GAACCATCTTATGAATCAAAACTGTGAAGTAACATAAACCAGCTTCTGAAGCAGAACCTTCAGAGCAACGAACTCATTTCAAGATAACAAGAACATTGAC
TGGTATTTACAAAAAGCAGTTGAAGAAATCCAATGATGCATTAGAAGTGAGGCTTAAGAATCTGATGAAGTAAATTTCATTATTAACACTTACTTAAAAG
ATAAGCCACTTCTAAGAAGGAACTTCTCTCAGCCAACTCTTCAATCGGGTAACCTCGATACCTGAGAATCCCTGCATCACCATCTATGTAACATATTGAT
GAACGAACGGGTGCAGTGTTGAGATAGCCCGGATCATAAAGCTTGAGACCCTTATCATTGTATCCAGTAGATATCTATATAACAAATAACAATTACAGTA
TATATAAAAAAAATAAAATAATAATCAAAACAAATAGTACTAAACTACACGACGCAAACAAGCATAG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.94755
Expected error %
0.4118
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g58750.1 Score 110 E Value 5e-25 Identity 29.40% Align. Length 176bp (26.39%) Frame 3
68416.m06548 citrate synthase, glyoxysomal, putative strong similarity to SP|P49299 Citrate synthase, glyoxysomal precursor {Cucurbita maxima}; contains Pfam profile PF00285: Citrate synthase
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g42790.1 Score 106 E Value 1e-23 Identity 29.30% Align. Length 173bp (25.94%) Frame 3
68415.m05298 citrate synthase, glyoxysomal, putative strong similarity to SP|P49299 Citrate synthase, glyoxysomal precursor {Cucurbita maxima}; contains Pfam profile PF00285: Citrate synthase
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAV59261.1| Score 110 E Value 2e-23 Identity 29.40% Align. Length 176bp (26.39%) Frame 3
At3g58750 [Arabidopsis thaliana] emb|CAB88292.1| citrate synthase-like protein [Arabidopsis thaliana] gb|AAU95420.1| At3g58750 [Arabidopsis thaliana] ref|NP_191434.1| citrate synthase, glyoxysomal, putative [Arabidopsis thaliana] pir||T49158 citrate synthase-like protein - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAD27711.1| Score 110 E Value 2e-23 Identity 29.40% Align. Length 176bp (26.39%) Frame 3
putative Citrate synthase, glyoxysomal precursor (GCS) [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0023C09
Clone
Clone name
hba-23c9
LE_HBa0023C09
C07HBa0023C09
P023C09
Clone type
BAC
Contamination
none
Estimated length
114,720
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found