Clone Read LE_HBa0023C20_SP6_134139

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0023C20_SP6_134139
Primer
SP6
ID from Seq. Facility
LE_HBa_023_C20-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
569 trimmed for vector and quality, 841 raw
Genbank Accession
DU044196
Sequence
>LE_HBa0023C20_SP6_134139 (raw untrimmed)
CTTTTCCGTATCCACCGTTGAGCTCTGTTGAGAATTACCTCCTTCTACTTGACCAGATGGTCTTGCCACTAAAGCTTCCTTCTTATGATGTCCAACCTTT
GAATAACTCCCACAGGAAGGGGAGAAAGGACATCATATAGGTTGACAAAGAATCTATTACTGAATATATCTGAGTGAGCCTTCCTCCCAGTGACGAGTAT
CGAAACTTCCCTCTTGAGCATTTTTTCTCACATTTCTCCGGTACATTGTTCCAGATTCCTACATATTTTGATTTGGCCCCCAATGACATGCCAAGATATG
AAGTAGGTAGAGACCCCACTTCTCTCCCCAAAAACATTACCAAGGCCTCCATTTTTGTAACTTCATTAATTGGGAAAATCTGACTCTTTTGCCAACTAAT
ATGCAGCCAATAACATCTTCAAAGAGCACCAAAATAATTCTCAAAATTCTCAGTTGCTCCACCTCTGCATCCCAAAAGATCAACGTGTCATCAACATATT
GCTACCTCAAAGCTATTAATCCACTCATTGTTTAACATTTTTAACCATGATGTGAAAACCTTCATGGGAATTATGAAAAGAAAAAGGAGACAAAAGGTCA
CCCCCTGCCCAAGACTTCTTTGAGACCTCTTTGAGCCATCTTTGAATAGGAAAAAAAAACCTCCTTTGGAAACCTTTAATTTTTTCTGAGAATCTGGACA
TGAAATATATGAAGTTTCATTTACTTGATCCCTTTTTCCTCCCAATCCCCCCTAAGTTTTAAACTTGTTTAAAAAAAAAATTTTCCATTCCCCAGTAATC
ATATTTCTTTATGCTTTTTTTTCATTATCCAAACTTGGCAC
>LE_HBa0023C20_SP6_134139 (trimmed for quality and cloning vector)
GAGCTCTGTTGAGAATTACCTCCTTCTACTTGACCAGATGGTCTTGCCACTAAAGCTTCCTTCTTATGATGTCCAACCTTTGAATAACTCCCACAGGAAG
GGGAGAAAGGACATCATATAGGTTGACAAAGAATCTATTACTGAATATATCTGAGTGAGCCTTCCTCCCAGTGACGAGTATCGAAACTTCCCTCTTGAGC
ATTTTTTCTCACATTTCTCCGGTACATTGTTCCAGATTCCTACATATTTTGATTTGGCCCCCAATGACATGCCAAGATATGAAGTAGGTAGAGACCCCAC
TTCTCTCCCCAAAAACATTACCAAGGCCTCCATTTTTGTAACTTCATTAATTGGGAAAATCTGACTCTTTTGCCAACTAATATGCAGCCAATAACATCTT
CAAAGAGCACCAAAATAATTCTCAAAATTCTCAGTTGCTCCACCTCTGCATCCCAAAAGATCAACGTGTCATCAACATATTGCTACCTCAAAGCTATTAA
TCCACTCATTGTTTAACATTTTTAACCATGATGTGAAAACCTTCATGGGAATTATGAAAAGAAAAAGGA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.95209
Expected error %
0.6994
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT40556.1| Score 78 E Value 3e-19 Identity 43.40% Align. Length 444bp (78.03%) Frame 3
hypothetical protein PGEC542.21 [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAD39568.2| Score 66 E Value 3e-11 Identity 36.40% Align. Length 388bp (68.19%) Frame 3
OSJNBa0019G23.12 [Oryza sativa (japonica cultivar-group)] ref|XP_474587.1| OSJNBa0019G23.12 [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0023C20
Clone
Clone name
hba-23c20
LE_HBa0023C20
P023C20
Clone type
BAC
Contamination
none
Estimated length
124,989
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found