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Clone Read LE_HBa0024I03_SP6_135161

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0024I03_SP6_135161
Primer
SP6
ID from Seq. Facility
LE_HBa_024_I03-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
55 trimmed for vector and quality, 912 raw
Sequence
>LE_HBa0024I03_SP6_135161 (raw untrimmed)
TCAACCTTTGTGTCAATTCTCCGAACTCCCACACCAATACTTTGATAACAAATATCGAGATAATATCCTTTATATATATTNGATATAACATCGAAAATTT
TCGAATTGAAATTTAAATATATCGGATTATAATAATAGGAGAATTAAAATGGAATAGAAATTAAAATTGATAGTTGAGAGTCGAGAGTTGAGAGAACATA
CAAAAATAGATGGAGAAATGAGAATACGATGATTTTGTAAGAAATAGTACAGGACAGGTGCATTTATAATATTCAAAATGGGTTAAAGTCGTAATGATTA
TAACTTGAGGGTTTAAAAAAATTAAAGTAGGGGGTGGTAGGGGGTGTTTGGGAACCACACAGCGCCCACAACCCGCTCGCGGACCCACTAGCCGTCTCCC
CCACGGCTTCACCCGGTAACTTCTCGCCTCACACTAGCAAAGGATCCCTGCCACCCACCGGTCCATCCCGACCGGCTCACCCAACACCACCGCGTCACCC
TGCCCCTGACCCGTCCTCTCTACCTCTTCTCCGCCTCCTACTTCCTCGACCCCTCCGCACGTGCTTGTCTCACATCACTCGCAATCTCTAACTCTGGCCG
CCTCCATCTGCCTCCACTACCGCACTATACACGACTCCGTGAGGGCCCCGCCCTGCCATCCCCCCACTCCGCCCCCTCACCGCCACCCTCACCGTCGTCT
CCCCCTTCCCCTCCTGCCGCCCCTCTCCTCCTACTGACTCCCCGGACCCCCGCGCCCAGCCACCCCTCCCCCTACCGCCCCCGCTCCTACCACCCCGATG
CACTCGATCTCCTCCCCTCCTTCTTTCCCACCACCTCGCCACCCTGCTCCCGCTCCGCCATCTAATCCACTCTCGCGACTACTCACGGCACTACTTGAAC
ACGGACCCCTCG
>LE_HBa0024I03_SP6_135161 (trimmed for quality and cloning vector)
GTAATGATTATAACTTGAGGGTTTAAAAAAATTAAAGTAGGGGGTGGTAGGGGGT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.781554
Expected error %
0.3343
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0024I03
Clone
Clone name
hba-24i3
LE_HBa0024I03
C12HBa0024I03
P024I03
Clone type
BAC
Contamination
none
Estimated length
43,294
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found