Clone Read LE_HBa0170B09_SP6_13569

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0170B09_SP6_13569
Primer
SP6
ID from Seq. Facility
LE_HBa_170_B09-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
259 trimmed for vector and quality, 837 raw
Genbank Accession
DU032148
Sequence
>LE_HBa0170B09_SP6_13569 (raw untrimmed)
AGGGATATTGGTTTATACCATTTTTTTGGAGTAATATTATTATCTTTGAGTGTTATTCCACTTCATGGATTTGTTTCCCTGTTAATCTAATTTCACCGCG
ATTTCTGTATCTGATGTTCCCTGTATGTCTTCATACGTTACATGGCTTATCTTTACACCTGAGCCCTGGAAAAAAAATTGAGTAGATTATAAGGTATGGA
AAAACGCGATTGATACTATTATATCATAATTGTGATAATTAATACCTGATTAGGACAACTTTCATGATTAGGACAATAATTTTGATCTATGATTATTGGA
TTTTGAACATTACTCATAACAATATGTTGAAATAAAACATTTCTAACAAAACCATTGCTAGGTCTTGCCCATGTTTTTACTCTCACTCCATTCTCAGTAC
TTGCGAAGCTAACCATCTTAACTGTTACATTTTGTACTCCTTGCTCTTGGGATTCCCAACCTAAGCTTCCAATGTCTACTTGTAAGAACTATAAAAATCA
AAGCAAATTCACTAAATAAGATAAGAATACATAATCAATCATTGATATGTTGCGTTTTAAATTTATTTTCTTGTTCTGGGCCACATACTAATGCTTTCTA
TCCGTTATTTCCAATTTTCTGTGGCTTATTAATATTCTTTCTTCTTCTATATCCAGTTTCCTTGATTTTATATTCTTATTCTTGTAGGGTTATTTTCTCT
TAATTTCCTTTGTTTTGATGGGTTTATTTTTGTACTACGATCCGCCTCCTCCTTGGCTACTGACCATTCCTCCCTTACACCTCCTTTTTGACGCTTTATT
TGTTCTCTTGTTCGCATTCTCTCATCTATAATGCTCT
>LE_HBa0170B09_SP6_13569 (trimmed for quality and cloning vector)
CTAATTTCACCGCGATTTCTGTATCTGATGTTCCCTGTATGTCTTCATACGTTACATGGCTTATCTTTACACCTGAGCCCTGGAAAAAAAATTGAGTAGA
TTATAAGGTATGGAAAAACGCGATTGATACTATTATATCATAATTGTGATAATTAATACCTGATTAGGACAACTTTCATGATTAGGACAATAATTTTGAT
CTATGATTATTGGATTTTGAACATTACTCATAACAATATGTTGAAATAAAACATTTCTA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.904612
Expected error %
0.761154
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g59850.1 Score 64 E Value 4e-16 Identity 69.20% Align. Length 256bp (98.84%) Frame 3
68416.m06679 polygalacturonase, putative / pectinase, putative similar to SP|P48979 Polygalacturonase precursor (EC 3.2.1.15) (PG) (Pectinase) {Prunus persica}; contains PF00295: Glycosyl hydrolases family 28 (polygalacturonases)
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g05660.1 Score 60 E Value 2e-15 Identity 72.70% Align. Length 256bp (98.84%) Frame 3
68414.m00587 polygalacturonase, putative / pectinase, putative similar to polygalacturonase 5 [Lycopersicon esculentum] GI:2459817; contains Pfam profile PF00295: Glycosyl hydrolases family 28 (polygalacturonases)
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAC28905.1| Score 76 E Value 2e-21 Identity 100.00% Align. Length 256bp (98.84%) Frame 3
polygalacturonase 4 [Lycopersicon esculentum] pir||T04320 polygalacturonase (EC 3.2.1.15) TAPG4 - tomato
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAB09576.1| Score 76 E Value 2e-21 Identity 100.00% Align. Length 256bp (98.84%) Frame 3
abscission polygalacturonase [Lycopersicon esculentum] pir||T07591 polygalacturonase (EC 3.2.1.15) TAPG4 precursor - tomato
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0170B09
Clone
Clone name
hba-170b9
LE_HBa0170B09
C12HBa0170B09
P170B09
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found