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Clone Read LE_HBa0170C01_SP6_13633

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0170C01_SP6_13633
Primer
SP6
ID from Seq. Facility
LE_HBa_170_C01-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
3 trimmed for vector and quality, 2390 raw
Sequence
>LE_HBa0170C01_SP6_13633 (raw untrimmed)
ATAACTGACTAGTCGCTACAGTAACNCTGTGTCGTGCGTTGCGATATGAGAGTCAGAGCAAGAGTAGCATGTAGATTGGTAGNTACTGATGAGTATAGAT
GTTGTAGANTAAACTNCCTNATNACACTATAGTGTGGAACATCGATCGATATGTAGCTCTAGCGATCAGCACAATATCAGTGTAACGTNTCGACTAGCTC
TCTNATCTAGTGAGCATCATTACTAGCGNGNAGNACTCGTATAGCGTGTGTNACACTGAGCAAAGAGTATGANAGAGTACTTAGACACNCNACNGCAGNT
AGNCANTGCGAGCCACCGAATCACGATAGCGGNAGTGTGTAGCTACGATGCTANTNCNTGCGTNGCTNTCGTGATATATCGCGCGCGCACCTCACAGAAN
ATGCAGATCGTNANACNTAACNNCCACACACATATGCNTNCANNCGCATGTGAGACACAGTNAGCAGCGCGNATGGAAGTGCGATGGAGTANAGTGCAAC
GGTACTGCTAGCGTTACANACGCGAACGAATGCACGAGCACANCGAGGAGCACATCNTGGNTNANANGCTATGNAGATNACCAAGCACATCGCGCTGTCG
AAACNCGCCCCTAATTGCTGCTNGTGTATGNTAGCTATGCGCNAGATATATACATGACACANGACACGCATATAGCNCGCAGTGCACTGTCGTGTNCTCN
TAAGTNCNGTNGNGCNATACGACNCTCTNGTNGCTCCCCTACNAGGCATACGATCTGCTACTGCACNCACGACAGCACAGTCATGCTGNCTACNACATAG
CATCGCTNCNACAACGACAANGTGAATACTATGTAGTGATGATACGCGCTGCTAACATNCTGAGTATNAGGACATGCATATCATGNCNATTNAGCATACA
CGTGCNGTACAATCAGTTGCGCCTGANANCTATANATANTAGTATAGTGATGTAGATANANATATGANTGNGNAGANATAGTAGATACATAACTATGACA
TNACTAGTGTTNCAGTGATGCGTGTCTATCTCTACTCATGANCACTGAGAGATGACCNCGTGTNTGATCTAGACTATGTNAGCTTTNATATAAACACAAA
NTATNGTANNGTGTATATAGCGTACGACTACTGANTGAAGTATCGCNTNGACTGTGTATCTATACACATANTGCATTANGTACNGNANCANACATNGCTA
NTNATGCATATGATATACCTATNCNCGTATGCAAATANGAGAGAGNGCTNAGCATGAACTTGCNANGTGAAGACGACATAAGTAGNACCTACTAGCGCTT
NCAGTACGATCAGCTANCGCACGTTGCGCATACGCGNGTNGCTANCTCACTACTNANCGATNCTACTGNGTATGTNGACACANTNTACTATANGNANACT
GAGCGANGCGTTGCAAACATACATTTTNCGATCTATGTTAGTGTGAGTNANTTNGATACTANATCATAGCACTACATAGAATNCACAGTGANCATNTGCT
TTCGTNCATTNACTGACTCTGTATNATTAGCGATCGTTGAATNGCTATCTGTANCGATAANTGCTATGTCACACTTACTCTCATGCAGTCTGCGCGACTA
NACTGTCGTACACATAGCATCGTCACGGTNAGACAGTGACCAANGATCGTNCATNCTACGANANATANTAAACANCTNCATNANTNTACTACANCTGTGT
ANATACGTACTCGNCNTACNGACACTAGCANCTNGTACGATCATCTAGACATNGCGACTNGTNTACTAGCNTNCNTANACACTNGTACTACGCTGCATAT
GACCACGAATCGCGTTAGTGAATACANTANGTANAGCANCNCGCTNACNACTGCACTANCAGGAACAAATNGTAGCGCTGATNCTGATTCAAATGCGNGC
TNANGCAAGCTATGNTGAACGACNTACATAANNTGCANCGNAGNACNGANGANTNGGATANCANCNAGCTAANCTGGAANGTCTACNGATNGATGATNAN
TNAGNNANCTGANGNAGGCAGNCTCAGCTATNGTTAGGTATTNGCTNGTGTNGTGTGCATACGTCGACCTCATACNTNCAATCTACGTAGTGTGNCACGC
TGNAACGNCTAGNGCTNAAACNGCTNACTNCGCCTACTTACTNCGACTGCGNCNCGCTNCACNTCNCACNTGCTNGACTCCCGACACATACANCGAACGA
CTNACNCGACTNCCCNCTACTTGACGNGNCGTGTGNCNTACATTACCGCTGCTNGNNGAGTAANGCNCGACGTTACGTNGCAGTANTANACCTTTGNACT
GATNGNACNCTNGTGCTNCGTANCTANTNGCTGNCTCATNTGTGNACATACATACAAGTGNTGNGNCTGCGANCGANCGTNCTGTNTNGN
>LE_HBa0170C01_SP6_13633 (trimmed for quality and cloning vector)
AGA

This is probably not a useful sequence.

Problems:
  • High predicted error rate
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
5.6171
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0170C01
Clone
Clone name
hba-170c1
LE_HBa0170C01
P170C01
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found