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Clone Read LE_HBa0026C01_SP6_136405

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0026C01_SP6_136405
Primer
SP6
ID from Seq. Facility
LE_HBa_026_C01-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
668 trimmed for vector and quality, 901 raw
Sequence
>LE_HBa0026C01_SP6_136405 (raw untrimmed)
CCTCTTGGCCTGGGGAACTACCAGAAAGCTCTCCTTGCTTGATAATAACATCAGAGAAAGTATCACCTTTTCTGCCCAGCAAGTGATGCTGGATCTTCGA
TTAGGGTATCAACAAATGCCTTGACAATCCTAACATCTTGTGGTGTAGCTCTTAAGCTATACCACGTTAAGAACTTCTGCCTGAATGTCTTGTCAATATG
CTCACCACACTCTAACCATCTAACTACTTTGACATAATACTCAAAATCCTTATCTCCAGTTCCAGCACATTCTTCATGCCATTCTCCAACTCTCTTCTTT
GAAGAACAGCCAACTTGTGGTCCATCCTCCTTCCCCGATCCATTATCAAGATCCTTGCTGCAATGTTCTGATTTCCCTTTCCGGCCGAGGCTTCCCTTCA
CATTCTCCATCTTGCAGGGTGTGATGGGTAAGCCAGCATCCACACTACCTACAAATGGTGCGAATTCTAAGGCAGTCTGGAGAGGTGCATTTGACCCATT
ATCAGTGCTCGTCTCTTCTGTTGTTTGAACATCTGAACATTGCTTGTTCTCAAGATTTATAGCATCAGTATTTGGCAAGGAGGTTACTTTGACAATGCTA
TCTTCCTCATCACCTAAAGATACCATTACTTCTTCATTTCCTATATGACTTTTACTAGCAAAAGCGACCCGTGGTGCAGCACAAGTCTGTAGAAATTGCT
TTATTCAGTGTTATCACAACAAGAAAGACAATTATCCCCTCTGTTCCCAGCCTCATTGCTGCATAGCACGATTTATTAGTTTCATCCTCCACTGAAGAAA
GAATAAAAAGGTTGCTGCAAATTGTTGGTGGACTTTGACTTCTTTCACTTCCAAACTTTTTTTGTTCAGATTAAAAGCTATTTTCTACTTTACTAGACCA
A
>LE_HBa0026C01_SP6_136405 (trimmed for quality and cloning vector)
TAACATCAGAGAAAGTATCACCTTTTCTGCCCAGCAAGTGATGCTGGATCTTCGATTAGGGTATCAACAAATGCCTTGACAATCCTAACATCTTGTGGTG
TAGCTCTTAAGCTATACCACGTTAAGAACTTCTGCCTGAATGTCTTGTCAATATGCTCACCACACTCTAACCATCTAACTACTTTGACATAATACTCAAA
ATCCTTATCTCCAGTTCCAGCACATTCTTCATGCCATTCTCCAACTCTCTTCTTTGAAGAACAGCCAACTTGTGGTCCATCCTCCTTCCCCGATCCATTA
TCAAGATCCTTGCTGCAATGTTCTGATTTCCCTTTCCGGCCGAGGCTTCCCTTCACATTCTCCATCTTGCAGGGTGTGATGGGTAAGCCAGCATCCACAC
TACCTACAAATGGTGCGAATTCTAAGGCAGTCTGGAGAGGTGCATTTGACCCATTATCAGTGCTCGTCTCTTCTGTTGTTTGAACATCTGAACATTGCTT
GTTCTCAAGATTTATAGCATCAGTATTTGGCAAGGAGGTTACTTTGACAATGCTATCTTCCTCATCACCTAAAGATACCATTACTTCTTCATTTCCTATA
TGACTTTTACTAGCAAAAGCGACCCGTGGTGCAGCACAAGTCTGTAGAAATTGCTTTATTCAGTGTTA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.970863
Expected error %
0.3279
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g30200.2 Score 96 E Value 1e-20 Identity 14.70% Align. Length 374bp (55.99%) Frame 1
68417.m04294 expressed protein contains weak similarities to Pfam profiles: PF00041 Fibronectin type III domain, PF00628 PHD-finger; supporting cDNA gi|11177136|dbj|AB050977.1|
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g30200.1 Score 96 E Value 1e-20 Identity 14.70% Align. Length 374bp (55.99%) Frame 1
68417.m04293 expressed protein contains weak similarities to Pfam profiles: PF00041 Fibronectin type III domain, PF00628 PHD-finger; supporting cDNA gi|11177136|dbj|AB050977.1|
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAD38062.1| Score 116 E Value 4e-25 Identity 14.30% Align. Length 539bp (80.69%) Frame 1
putative coiled-coil protein [Oryza sativa (japonica cultivar-group)] dbj|BAD38597.1| putative coiled-coil protein [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB81013.1| Score 96 E Value 6e-19 Identity 14.70% Align. Length 374bp (55.99%) Frame 1
putative protein [Arabidopsis thaliana] emb|CAB52464.1| putative protein [Arabidopsis thaliana] dbj|BAB17836.1| nuclear coiled-coil protein AT4g30200 [Arabidopsis thaliana] ref|NP_194749.1| expressed protein [Arabidopsis thaliana] pir||T14080 hypothetical protein F9N11.50 - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0026C01
Clone
Clone name
hba-26c1
LE_HBa0026C01
P026C01
Clone type
BAC
Contamination
none
Estimated length
97,300
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found