Clone Read LE_HBa0027E04_SP6_137275

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0027E04_SP6_137275
Primer
SP6
ID from Seq. Facility
LE_HBa_027_E04-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
693 trimmed for vector and quality, 950 raw
Genbank Accession
DU045589
Sequence
>LE_HBa0027E04_SP6_137275 (raw untrimmed)
TGGGACTCATTTGTACTCTCTATGCAGCAANCAGTTAGGTCTAGTTGTTGTTCCCTTGTCAGAAATATGTTTTAAAGTGGATGATATGTCTGAACTTTAT
TTCGGATACAGAACAGCTGATGGAAGGAAGTGATATCTGTTGCCGAAATCCTTCGCGACATGATCGAAATTCTTGAAACTAAAGCACCCTTCAATAGTTA
ACTGTTTCAGTGATGATTGAATCACTGAGAAGCTTGAAGGGGTGACAAAAAGTTGGTCACAACAGAGGTTACTTCTGTTTATTGAGCAAATGCCTAGTAT
GAATATAAGAAGCCTTAGAAGCATACTATTATGTTTAAAGAAGAAATGAGTTGGTGATGACTTCATTCTTTCTTAAAAGTGGTTGTTGACACACAGTTTC
TTGAAAATTTGCCTTTTCTTTGAGTGAAAATAGAGGGTGTAGAATGGCCTCAAGAAAATTAAGGTTGGTCAAGAGAATATATAATGGGGAGTTTTTTTGA
AAATGTCACTATCAGTAGCACTAATTAAGTGGTCTATAGGACTGCATGTGAGGACTATATATCTTGAAAGTGGATGTTAATTTATGGAAAATATTGAAAA
AAATTTGATTTTAAACTCAACAGTGTTTTTGTTTGAAGTGGAAAATTTCACCTGTCATTTGGTACTTCACTAGTGTGGTTCCAACTACCACCATATATGT
TAATTTTTAACATGTCTCATTGCTATTTTGAGCAAAATTTATCTGCTGAATTTGGTATCCTACACCAACTATTTATTCAAAGTGTTCACATTTGGTGAAA
CAATGTCACCAAATTTTTTATTTAAAGCCATCTATACCAAAAGTGATATGTACTATTTTTATATTTTTCCACCCTTTTCAGTGCATCCAAACTTCTATTT
CGGTTATTATTTATCTTGGTCCTTGTCAAATACAAAATAAAACCCCAATT
>LE_HBa0027E04_SP6_137275 (trimmed for quality and cloning vector)
AATATGTTTTAAAGTGGATGATATGTCTGAACTTTATTTCGGATACAGAACAGCTGATGGAAGGAAGTGATATCTGTTGCCGAAATCCTTCGCGACATGA
TCGAAATTCTTGAAACTAAAGCACCCTTCAATAGTTAACTGTTTCAGTGATGATTGAATCACTGAGAAGCTTGAAGGGGTGACAAAAAGTTGGTCACAAC
AGAGGTTACTTCTGTTTATTGAGCAAATGCCTAGTATGAATATAAGAAGCCTTAGAAGCATACTATTATGTTTAAAGAAGAAATGAGTTGGTGATGACTT
CATTCTTTCTTAAAAGTGGTTGTTGACACACAGTTTCTTGAAAATTTGCCTTTTCTTTGAGTGAAAATAGAGGGTGTAGAATGGCCTCAAGAAAATTAAG
GTTGGTCAAGAGAATATATAATGGGGAGTTTTTTTGAAAATGTCACTATCAGTAGCACTAATTAAGTGGTCTATAGGACTGCATGTGAGGACTATATATC
TTGAAAGTGGATGTTAATTTATGGAAAATATTGAAAAAAATTTGATTTTAAACTCAACAGTGTTTTTGTTTGAAGTGGAAAATTTCACCTGTCATTTGGT
ACTTCACTAGTGTGGTTCCAACTACCACCATATATGTTAATTTTTAACATGTCTCATTGCTATTTTGAGCAAAATTTATCTGCTGAATTTGGT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.943852
Expected error %
0.2578
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g41510.1 Score 72 E Value 3e-13 Identity 14.10% Align. Length 296bp (42.71%) Frame 2
68415.m05129 FAD-binding domain-containing protein / cytokinin oxidase family protein similar to cytokinin oxidase, Zea mays [gi:3882018] [gi:3441978]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAB84333.1| Score 72 E Value 1e-11 Identity 14.10% Align. Length 296bp (42.71%) Frame 2
putative cytokinin oxidase [Arabidopsis thaliana] ref|NP_181682.1| FAD-binding domain-containing protein / cytokinin oxidase family protein [Arabidopsis thaliana] pir||T00807 probable cytokinin oxidase [imported] - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0027E04
Clone
Clone name
hba-27e4
LE_HBa0027E04
P027E04
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found