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Clone Read LE_HBa0170D07_SP6_13753

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0170D07_SP6_13753
Primer
SP6
ID from Seq. Facility
LE_HBa_170_D07-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
5 trimmed for vector and quality, 1006 raw
Sequence
>LE_HBa0170D07_SP6_13753 (raw untrimmed)
TGCGGTTCTGTGATCTCACATGATCACCGCTCTTATCCTGCACACTTCTCGTGAGATTAGTGTATTTGTTCGAACTAACATATCGAACATTAAATCACTA
TATCTGTGGTATTGCAATAAGATAAATTCGTCTCCACTCTACCACTCCACAGCGAATATGATCGATTAGCTTCCATTCAGTATTTAGACATCATCACTCA
ACACAGTCGTCAATTCTATACCGGACGTTAATGCTGCAATAGTATACCTCAATAAATCTGAACTGTA
GAAACTTATTCTTATGACATATTTGCTCCCCAC
TCAACACTCAATCTTCACATAACGGATAGCTACTCATAGTGAATGATATATTAGATAGGGTCATGCTGATGTACATCTCTTATCCTCTTCTTATCATTCG
GTGTCTTGTATAGTTAGATATACTTATATCATATGATGTGTCTAGCTGACGAAATTCTAGTACTCTCTCAATGTTTAACTACCATACTTCGTATCAGCTC
CTTCACATATTCTTTTCTCTCGACACTTTGTAGTATAAAATGCTTCCTGATAGGGCACTCATGATATGCACAATTAGATAAATGCATCATACCTCATAGT
ATTTTACGGTTCTTTTCTTCCACTTTTGTACTCAATACTCGCGCCTTCCTTCTCATTTCTCCGTATCACCGGAGAAATCCAATTTCCAATACTTGTTAAA
GTGACATCCAACTAACCCAACCCCACCCCCAAAAATACAAAAGTGCCTTTCCACATCCAAAAATGATTTGCCTTTTATATTGTTACATATTCTGTTACCT
AAGTTTCTAAAAAACTATTAATTGTCCACGCTATTTAAATTCTAAAACTGGCATACCTAAGGTTCCATTCATTCTCTAACTGGCCAACAAAATCTCCAAG
ACCCTTTTACACTCTCTAATAATCGTATTTTCCTTCTACCAACCCTCAAATTCCTATTCCTTCTTCTTTCAATTGGGAACTCCTTATCCTTCCCTACCCT
CTATTA
>LE_HBa0170D07_SP6_13753 (trimmed for quality and cloning vector)
GAAAC

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.24883
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0170D07
Clone
Clone name
hba-170d7
LE_HBa0170D07
C12HBa0170D07
P170D07
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found