Clone Read LE_HBa0030B23_SP6_138705

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0030B23_SP6_138705
Primer
SP6
ID from Seq. Facility
LE_HBa_030_B23-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
631 trimmed for vector and quality, 771 raw
Genbank Accession
DU042244
Sequence
>LE_HBa0030B23_SP6_138705 (raw untrimmed)
AGAAAAAAAAATCGTTGGAAGTCGAATTCGAGTCCCCTTATCTGTAATGATTGACAAGGGGACCCCATGCAACTTCACAATTTCTCTAACATACAATTTA
GCATGTTCCTCTATCGAGTAGGAAACCTTTACAGGGAGGAAGAGGGATGACTTGGTCAATCTAACCACTATGACCCATATTAAGTTATATTGTCGACGGG
TACGAGATAAACCTACCACAAAGTCTCTGTTAACATTTTCCCATTTCCAAGTGGGAGGAATGTCAATATTTTGGGTTAGACCTCTGATACGCTCAAACTT
ACTTCTCAAATGAGAAGTAAAGCGGTCGCGTCAAGTAAATAACCCAACTAGTGAGGTTGGGATCGTTCTCACGAGGAAAATAGTCTAGACTTAACTCCAA
CTTGTATTTACTATTGTTCGGTTGATGACTTTCTTAAAAAGTAAAAGCATAAAAGGGGGGTTTTGTACTTCCTACTAAAATAAAAATAACTAACGAACTT
GACAGAGACACTTAACAGCTTTTAATGTTGAGTTTTAATCAAGTAATCAAAGTAACTAGGGTTTAAGTGTTCCCCACAGGTTCATAACATGATAATTCTA
GCTATAACAATTCTTTCCTAGTATCTTGCATGCAAAGTGATAAGTTATGTATTTCTAAATCCTTGGTCCGGCATCTAGAAAATCTCACTCCGCACCTTGG
TCCGGCTACGTGTGTTGCTTTCCTAACCCTTATCTTTACTCATAATTAAAGCATCATATTCAATATTTGAT
>LE_HBa0030B23_SP6_138705 (trimmed for quality and cloning vector)
ATTCGAGTCCCCTTATCTGTAATGATTGACAAGGGGACCCCATGCAACTTCACAATTTCTCTAACATACAATTTAGCATGTTCCTCTATCGAGTAGGAAA
CCTTTACAGGGAGGAAGAGGGATGACTTGGTCAATCTAACCACTATGACCCATATTAAGTTATATTGTCGACGGGTACGAGATAAACCTACCACAAAGTC
TCTGTTAACATTTTCCCATTTCCAAGTGGGAGGAATGTCAATATTTTGGGTTAGACCTCTGATACGCTCAAACTTACTTCTCAAATGAGAAGTAAAGCGG
TCGCGTCAAGTAAATAACCCAACTAGTGAGGTTGGGATCGTTCTCACGAGGAAAATAGTCTAGACTTAACTCCAACTTGTATTTACTATTGTTCGGTTGA
TGACTTTCTTAAAAAGTAAAAGCATAAAAGGGGGGTTTTGTACTTCCTACTAAAATAAAAATAACTAACGAACTTGACAGAGACACTTAACAGCTTTTAA
TGTTGAGTTTTAATCAAGTAATCAAAGTAACTAGGGTTTAAGTGTTCCCCACAGGTTCATAACATGATAATTCTAGCTATAACAATTCTTTCCTAGTATC
TTGCATGCAAAGTGATAAGTTATGTATTTCT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.965456
Expected error %
0.0786
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 117 E Value 3e-25 Identity 18.80% Align. Length 281bp (44.53%) Frame 1
putative retrotransposon protein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38744.1| Score 115 E Value 6e-25 Identity 18.40% Align. Length 281bp (44.53%) Frame 1
putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0030B23
Clone
Clone name
hba-30b23
LE_HBa0030B23
P030B23
Clone type
BAC
Contamination
none
Estimated length
121,350
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found