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Clone Read LE_HBa0030J16_SP6_139075

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0030J16_SP6_139075
Primer
SP6
ID from Seq. Facility
LE_HBa_030_J16-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
621 trimmed for vector and quality, 851 raw
Genbank Accession
DU042581
Sequence
>LE_HBa0030J16_SP6_139075 (raw untrimmed)
ATTAAACACTCTATAACATCTATTTTTGGTATCCATTTTTTGGCAAAGCAATACGCAAGAGATAGATTAATAACATGTCGCTTGCGGTCAATAAAGCCTC
ACCCCAAAATGAGTTCGTCAACTTTGCTTCAGAAAGCAAACATCTAAATCACTCCATCAATGTCCTATCCATTCTCTCAGCCAAACCATTAAGTTGAGGA
GTTTTGGGAGGAGTCTTCTGGTGTCTAATACCTTGATGCTTGCAGTATTTGTCAAATGGTTCACAATATTCATCACCATTATCAGTACTAATACACTTCA
ATTTCTTTCCAGTTTCGCTTTCAACTGAAGCCTGAAACTGCTTAAAGACACCTAACACTTGGTCTTTAGTCTTCAAGACATAGACCCAAAGTTTTCTCGA
GCAATCATCAATGAAGGTGACAAAGTCGACTGCACCACCCAATGTCTTTGTCTTCATTGGACCACATAAATCAGAGTGCACCAACTCAAGCAACTCTGTC
TTTCTCGAAGAGGGGTAGTACTTAAAGGAAACTCTATTTTGTTTACCAGCCAAGCAATGTTCACACTTTTCTAATTTAGCACTTATGAAATTTGACAAAA
ACATCCTCTTGGCTAGAACATTAAGTCCTTTCTCGCTGATGTGTCTAAGTCTCTTATGCCATAACATTGAAGATTTATCACTCTCAACTGCAGTCACCAT
ATCAACATAAGTAGAGGTCGTAGTCTAATATAGACCACCACATTTGTTACCACGAGCCACAACCAAGGAACCCTTATGAGCTTCCATTTTCATTCACCGT
TGGACTAACATATCCTTCATCATCTAAAACACCAATGAAAACAGGGGGAAC
>LE_HBa0030J16_SP6_139075 (trimmed for quality and cloning vector)
CAAAGCAATACGCAAGAGATAGATTAATAACATGTCGCTTGCGGTCAATAAAGCCTCACCCCAAAATGAGTTCGTCAACTTTGCTTCAGAAAGCAAACAT
CTAAATCACTCCATCAATGTCCTATCCATTCTCTCAGCCAAACCATTAAGTTGAGGAGTTTTGGGAGGAGTCTTCTGGTGTCTAATACCTTGATGCTTGC
AGTATTTGTCAAATGGTTCACAATATTCATCACCATTATCAGTACTAATACACTTCAATTTCTTTCCAGTTTCGCTTTCAACTGAAGCCTGAAACTGCTT
AAAGACACCTAACACTTGGTCTTTAGTCTTCAAGACATAGACCCAAAGTTTTCTCGAGCAATCATCAATGAAGGTGACAAAGTCGACTGCACCACCCAAT
GTCTTTGTCTTCATTGGACCACATAAATCAGAGTGCACCAACTCAAGCAACTCTGTCTTTCTCGAAGAGGGGTAGTACTTAAAGGAAACTCTATTTTGTT
TACCAGCCAAGCAATGTTCACACTTTTCTAATTTAGCACTTATGAAATTTGACAAAAACATCCTCTTGGCTAGAACATTAAGTCCTTTCTCGCTGATGTG
TCTAAGTCTCTTATGCCATAA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.959274
Expected error %
0.1366
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAV88069.1| Score 280 E Value 2e-74 Identity 22.90% Align. Length 581bp (93.56%) Frame 2
hypothetical retrotransposon [Ipomoea batatas]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
pir||T02206 Score 261 E Value 7e-69 Identity 22.20% Align. Length 593bp (95.49%) Frame 2
hypothetical protein - common tobacco retrotransposon Tto1 dbj|BAA11674.1| ORF(AA 1-1338) [Nicotiana tabacum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0030J16
Clone
Clone name
hba-30j16
LE_HBa0030J16
P030J16
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found