Clone Read LE_HBa0030L24_T7_139188

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0030L24_T7_139188
Primer
T7
ID from Seq. Facility
LE_HBa_030_L24-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
738 trimmed for vector and quality, 829 raw
Genbank Accession
DU042678
Sequence
>LE_HBa0030L24_T7_139188 (raw untrimmed)
CTGGGGACCGAGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGTCAGACTGGTGCTTATTCGCCATTTATCTCATTCTTTGTTGAGCCCTGGAC
AATTGGAACTTCTTCAATGCAATAATAGTTTCCCTTTCCTCCAAAGATCTATCAACCATCTTATTAGAGGACTCACAAGCCAAATAGGGAAGATGAATAT
TTGGTTTTTGACCATAAAAAGCTTCTAAAGGGGAACACTTGAGAGGTGAGTGATAGGTTGTGTTGTACCACCACTCATCAAGAGGTAAGTGAGCCACCTA
TTCCAAAGGTTTGTCTAAGCAAAAACACATTAGATAAGTCTCCAAGGTCCAATTCAAGACCTCATTCTGACCATCTGTTTGAGAATGGTAAGCTGTAGAC
TTATGCAATCGAACTCCTTTGAATGTGAACAGTTCTTGCCAGAAGGAACTTAAGAAACAAGATCCTTATCACTGTCTATAGTAAAGGGCATACCATGCAA
CCTAAACACAATGTCCAAGAAGCTATGAGCTACAATCTGAGCAGTGTAAGGATGTTGTAAGGCAATGAAATGGAAATACTTACTCAACCTATCAACCACC
ACTAGAATGACATCCTTGCCTTTAGATTTAGGTAAACCCTCAATGAAATTCAAGTTGATGTCAGTCCAACACCTTTAGGAATGGGTAGAGGTTGAATGAA
GCCCGGATAAGCCTGAGGCATCATACTTGTGTCTTTGGCATACATCAACATCTATTAATAAAGCTCCTAACATTCTGTAACCCTAAATCTTCTAGTAAAA
AATAGGATTGCCATCTCCCTAACGGGTGA
>LE_HBa0030L24_T7_139188 (trimmed for quality and cloning vector)
AGCTTGTCAGACTGGTGCTTATTCGCCATTTATCTCATTCTTTGTTGAGCCCTGGACAATTGGAACTTCTTCAATGCAATAATAGTTTCCCTTTCCTCCA
AAGATCTATCAACCATCTTATTAGAGGACTCACAAGCCAAATAGGGAAGATGAATATTTGGTTTTTGACCATAAAAAGCTTCTAAAGGGGAACACTTGAG
AGGTGAGTGATAGGTTGTGTTGTACCACCACTCATCAAGAGGTAAGTGAGCCACCTATTCCAAAGGTTTGTCTAAGCAAAAACACATTAGATAAGTCTCC
AAGGTCCAATTCAAGACCTCATTCTGACCATCTGTTTGAGAATGGTAAGCTGTAGACTTATGCAATCGAACTCCTTTGAATGTGAACAGTTCTTGCCAGA
AGGAACTTAAGAAACAAGATCCTTATCACTGTCTATAGTAAAGGGCATACCATGCAACCTAAACACAATGTCCAAGAAGCTATGAGCTACAATCTGAGCA
GTGTAAGGATGTTGTAAGGCAATGAAATGGAAATACTTACTCAACCTATCAACCACCACTAGAATGACATCCTTGCCTTTAGATTTAGGTAAACCCTCAA
TGAAATTCAAGTTGATGTCAGTCCAACACCTTTAGGAATGGGTAGAGGTTGAATGAAGCCCGGATAAGCCTGAGGCATCATACTTGTGTCTTTGGCATAC
ATCAACATCTATTAATAAAGCTCCTAACATTCTGTAAC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.963252
Expected error %
1.1782
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAB03109.1| Score 143 E Value 3e-56 Identity 50.40% Align. Length 694bp (94.04%) Frame 1
retroelement pol polyprotein [Arabidopsis thaliana] gb|AAG51046.1| gypsy/Ty-3 retroelement polyprotein; 69905-74404 [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAG51464.1| Score 140 E Value 1e-53 Identity 49.60% Align. Length 718bp (97.29%) Frame 1
gypsy/Ty3 element polyprotein, putative [Arabidopsis thaliana] pir||G86474 probable protein gypsy/Ty3 element polyprotein [imported] - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0030L24
Clone
Clone name
hba-30l24
LE_HBa0030L24
P030L24
Clone type
BAC
Contamination
none
Estimated length
70,363
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found