Clone Read LE_HBa0031D09_T7_139542

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0031D09_T7_139542
Primer
T7
ID from Seq. Facility
LE_HBa_031_D09-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
798 trimmed for vector and quality, 968 raw
Genbank Accession
DU048252
Sequence
>LE_HBa0031D09_T7_139542 (raw untrimmed)
CTAAGCCCGGTTACCCGGGGGACCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGTTTGTTTTTAAATTTATTTATTTAGTCGTTTGTTATACTTTACAT
TCCTAACTTTGTCTGTTTATGGTTTCAGTAATGGAAGTTTTAGACCTGCCAATATCACGTCATGTTACGAGCGTATGAACAAAATGAGGCTGGTAATGAC
GAGGTTGATGATTACAAAGAAGAAAGTGAGGAACCAGAGTATGTCACCGAGGAATTTCGGCAGTTCAAAAATCAGCATAAACCAAATCTAAAGGAAACAG
AAACAGTAAATCTGGGAGACCCAGAGGGTGTCAAAGAGGTTAAGATCAGCATCCACTTAAATGAAACTCAGAGAGAAGGCCTGGTTCATTTGCTTACTGA
ATATATTGATGTGTTTGTTTGGGAAGTCGACATGCAAGGGCTGAGACCAATATTGTATCTTATAAACTGCCGATCAATCCGGGGTTCGATCCGTTGAAGC
AAAAAACTCAAAAATTCAAGCCTGAACTAAGTTTAAAGATCAAAGAAGAGATCACCAAGCAAATAGAATCTTTATTGGTGGAAGTGATAAAATACCCAAC
TTAGTTAGCCAATGTCGTTCCGGTTGCCAAAAAAAGACGGGAAAATTAGGATTTGTGTCGACTATAGAGACCTCAACAAAGTTAGCCCGAAGGAAAATTT
TTCATTGCCGAATATTCATATTTTTATTGACAACTTTGCTAAACATGAAATGCAGTCATTTGTGGATTGTTACGCAGGCTATCACAAAATTAGGATGGAT
GAGGAGGATGCAGAAAAGACAGTTTTCATTACACCTTGGGGTGTATATCATACAGGGTGATGTCGTTTGCACTCAGAATGTCGGTGCTACCTACATGAAG
GCTATGACACCCTATTTCACAACTGATTCTAAGGAGATTAAGTGATGTGGATAACGTCTAATCAGTCC
>LE_HBa0031D09_T7_139542 (trimmed for quality and cloning vector)
AGCTTGTTTGTTTTTAAATTTATTTATTTAGTCGTTTGTTATACTTTACATTCCTAACTTTGTCTGTTTATGGTTTCAGTAATGGAAGTTTTAGACCTGC
CAATATCACGTCATGTTACGAGCGTATGAACAAAATGAGGCTGGTAATGACGAGGTTGATGATTACAAAGAAGAAAGTGAGGAACCAGAGTATGTCACCG
AGGAATTTCGGCAGTTCAAAAATCAGCATAAACCAAATCTAAAGGAAACAGAAACAGTAAATCTGGGAGACCCAGAGGGTGTCAAAGAGGTTAAGATCAG
CATCCACTTAAATGAAACTCAGAGAGAAGGCCTGGTTCATTTGCTTACTGAATATATTGATGTGTTTGTTTGGGAAGTCGACATGCAAGGGCTGAGACCA
ATATTGTATCTTATAAACTGCCGATCAATCCGGGGTTCGATCCGTTGAAGCAAAAAACTCAAAAATTCAAGCCTGAACTAAGTTTAAAGATCAAAGAAGA
GATCACCAAGCAAATAGAATCTTTATTGGTGGAAGTGATAAAATACCCAACTTAGTTAGCCAATGTCGTTCCGGTTGCCAAAAAAAGACGGGAAAATTAG
GATTTGTGTCGACTATAGAGACCTCAACAAAGTTAGCCCGAAGGAAAATTTTTCATTGCCGAATATTCATATTTTTATTGACAACTTTGCTAAACATGAA
ATGCAGTCATTTGTGGATTGTTACGCAGGCTATCACAAAATTAGGATGGATGAGGAGGATGCAGAAAAGACAGTTTTCATTACACCTTGGGGTGTATA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.963659
Expected error %
0.207
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU89777.1| Score 132 E Value 1e-29 Identity 27.30% Align. Length 215bp (26.94%) Frame 3
gag-pol polyprotein-like [Solanum tuberosum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU90285.1| Score 131 E Value 1e-45 Identity 78.10% Align. Length 396bp (49.62%) Frame 2
putative gag/pol polyprotein, 3'-partial [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0031D09
Clone
Clone name
hba-31d9
LE_HBa0031D09
C08HBa0031D09
P031D09
Clone type
BAC
Contamination
none
Estimated length
61,371
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found