Clone Read LE_HBa0031F12_T7_139644

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0031F12_T7_139644
Primer
T7
ID from Seq. Facility
LE_HBa_031_F12-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
895 trimmed for vector and quality, 958 raw
Genbank Accession
DU048344
Sequence
>LE_HBa0031F12_T7_139644 (raw untrimmed)
CAGACCTGGGACCCGGGGGGTCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCTTCAAGGATAGTAACACCTTCATAAATGTTGCACTTTTATACTTTA
TATGCTTGAATGTTTTAATTAGAAACTTCTTCTTGTAACACATCTGAGCTTCGAAACCTTCAATTTTACATAAGCTCCTTTTTTCTTTTCTTTTCTGGAG
ATACCTCCTACTTAGATTCCATCTTGTTCTTCTAAGTCTCGATTGTGGTACTTCTACTACAACCAAACAACTTTTAGCGACATTAAATATTGACATTAAT
AAAAAATGCTAAAGCCTTTATCGGCATTAGTAAAGTGTCAATAGGATCAACGTCGTTAAAGGCTTTAGGAATATATATATGTATGTATAGGACCATTGAA
CATTATAAATTTTCTATTTCTTGAGAAGGTGACCTTCAACATCCTTCGTCATACCAACGAAATAATCCAAGAGAGCAAGAGGTTATGGAATATCTTCAGT
TTTCTTCTCGTACACAAGTATACTTGTAGTCCAATGTTCACATTATGTAATGATAGTAAAAGAATTATACAACTCTAAAAGATGTCCTTCAATCACTTTC
CAGGTGATCAATTCCTTCCGAGAATCGATGGCTTCGATCACAGTCTTATCAAACAATTCTTTTCCATCTATTCATTGAGATCAAATATAAGAGATGTTAC
TTCCAATTCAAATGTTAAACTCCTCATAAAAGATCTAAACATTTAGAATATAGTATTAATTGAGGAAAATGACTTTTGCCTACAACTAAAATATATTAAA
GATATTCAACACCATAAAGTAACTTTTGCCTACAACTAAAATTTTTAAAGAAAATCAAACACCATGGAAATTATAGATTTTCTTGAATAATGACTTTCGT
AAAATGAAATACACCTGAATATATAAAATTGATACAGAAAAAATTTTGAGAAAGAAAA
>LE_HBa0031F12_T7_139644 (trimmed for quality and cloning vector)
AGCTTCTTCAAGGATAGTAACACCTTCATAAATGTTGCACTTTTATACTTTATATGCTTGAATGTTTTAATTAGAAACTTCTTCTTGTAACACATCTGAG
CTTCGAAACCTTCAATTTTACATAAGCTCCTTTTTTCTTTTCTTTTCTGGAGATACCTCCTACTTAGATTCCATCTTGTTCTTCTAAGTCTCGATTGTGG
TACTTCTACTACAACCAAACAACTTTTAGCGACATTAAATATTGACATTAATAAAAAATGCTAAAGCCTTTATCGGCATTAGTAAAGTGTCAATAGGATC
AACGTCGTTAAAGGCTTTAGGAATATATATATGTATGTATAGGACCATTGAACATTATAAATTTTCTATTTCTTGAGAAGGTGACCTTCAACATCCTTCG
TCATACCAACGAAATAATCCAAGAGAGCAAGAGGTTATGGAATATCTTCAGTTTTCTTCTCGTACACAAGTATACTTGTAGTCCAATGTTCACATTATGT
AATGATAGTAAAAGAATTATACAACTCTAAAAGATGTCCTTCAATCACTTTCCAGGTGATCAATTCCTTCCGAGAATCGATGGCTTCGATCACAGTCTTA
TCAAACAATTCTTTTCCATCTATTCATTGAGATCAAATATAAGAGATGTTACTTCCAATTCAAATGTTAAACTCCTCATAAAAGATCTAAACATTTAGAA
TATAGTATTAATTGAGGAAAATGACTTTTGCCTACAACTAAAATATATTAAAGATATTCAACACCATAAAGTAACTTTTGCCTACAACTAAAATTTTTAA
AGAAAATCAAACACCATGGAAATTATAGATTTTCTTGAATAATGACTTTCGTAAAATGAAATACACCTGAATATATAAAATTGATACAGAAAAAA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.929615
Expected error %
1.6778
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAA55812.1| Score 92 E Value 2e-17 Identity 19.30% Align. Length 248bp (27.71%) Frame 1
Sn-1 [Capsicum annuum] pir||S65081 wound-induced protein Sn-1, vacuolar membrane - pepper
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAA55813.1| Score 91 E Value 6e-17 Identity 19.10% Align. Length 245bp (27.37%) Frame 1
Sn-2 [Capsicum annuum] pir||S65082 Sn-2 protein - pepper
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0031F12
Clone
Clone name
hba-31f12
LE_HBa0031F12
C01HBa0031F12
P031F12
Clone type
BAC
Contamination
none
Estimated length
93,304
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found