Clone Read LE_HBa0031H20_T7_139756

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0031H20_T7_139756
Primer
T7
ID from Seq. Facility
LE_HBa_031_H20-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
782 trimmed for vector and quality, 914 raw
Genbank Accession
DU048447
Sequence
>LE_HBa0031H20_T7_139756 (raw untrimmed)
GCAAACTCGGATACCGGGGGACCTCTAGAGTCGACCTGCAGGCATGCAAGCTTAACGCTCCAAATTCATATCATGGCTCCAATGGTATTACTTTTGGCAA
CGGTGAGTCCCTTAATATTTCTCACACTGGCACGGGTACCATTAAAAACCCCACCGCTATCTTTCACCTAGGTAACCTTACCCACGTCCCTTCTATTAAA
ACCAATCTCCTTTCAGTTCACCAATTCACAAAAGACAATAATTGCTCACTCTTGTTCACCTCTAATGATTTTCAGATCCTAGACAATACTACCAAGAGGA
TGATTTTTCAGGGCCCCTGTGAGCATGGTCTGTACGTTCTTCCTAGCACACGTTCGTCTGCCCACCCAGTTTCAGAAAGCGTTCCTGTGGCTCCGGTGGC
TCTTTCGGCTGATGGCCACAATCTGTTGTGGCATAGTCGTCTGGGTCACCCGTCTACTCAAATAATAAATTCTTTAATGTCTCAATTAGGTTTTTCTTCC
ATTCATGTAAACAATTGTGACTCTTGTTCAATTGCTATATCTCATAAATTACCTTTTACTTTATCAGAGAAGCGTACAACTGCACCTTTTCAACTTATTC
ATTCTGACCTATGGGGTCCTACTGCTGTTCCTTCATTTGCTGGTTTTCGCTATTATATTTGTTTTGTGGATGATTTTACAAAATACACTTGGTTGTACCC
ACTAAAACACAAATCACAGGCATACACCACCTTTGTCACTTTTGAAAAATGGTCAAAACACAATTCAATTCTCATGTTAAACTTTTTCGAAATGACAATG
GAAAGAATATGTCATAACATCTTTGGCCATTTCTGCATTCCTGGGAAATATACATCAACCTCCGGTCCTAACTCCCGAACAGAAGGGGTGGCTGAACGTA
GCATTGCCATTCCT
>LE_HBa0031H20_T7_139756 (trimmed for quality and cloning vector)
AGCTTAACGCTCCAAATTCATATCATGGCTCCAATGGTATTACTTTTGGCAACGGTGAGTCCCTTAATATTTCTCACACTGGCACGGGTACCATTAAAAA
CCCCACCGCTATCTTTCACCTAGGTAACCTTACCCACGTCCCTTCTATTAAAACCAATCTCCTTTCAGTTCACCAATTCACAAAAGACAATAATTGCTCA
CTCTTGTTCACCTCTAATGATTTTCAGATCCTAGACAATACTACCAAGAGGATGATTTTTCAGGGCCCCTGTGAGCATGGTCTGTACGTTCTTCCTAGCA
CACGTTCGTCTGCCCACCCAGTTTCAGAAAGCGTTCCTGTGGCTCCGGTGGCTCTTTCGGCTGATGGCCACAATCTGTTGTGGCATAGTCGTCTGGGTCA
CCCGTCTACTCAAATAATAAATTCTTTAATGTCTCAATTAGGTTTTTCTTCCATTCATGTAAACAATTGTGACTCTTGTTCAATTGCTATATCTCATAAA
TTACCTTTTACTTTATCAGAGAAGCGTACAACTGCACCTTTTCAACTTATTCATTCTGACCTATGGGGTCCTACTGCTGTTCCTTCATTTGCTGGTTTTC
GCTATTATATTTGTTTTGTGGATGATTTTACAAAATACACTTGGTTGTACCCACTAAAACACAAATCACAGGCATACACCACCTTTGTCACTTTTGAAAA
ATGGTCAAAACACAATTCAATTCTCATGTTAAACTTTTTCGAAATGACAATGGAAAGAATATGTCATAACATCTTTGGCCAT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.960412
Expected error %
0.5174
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
pir||T02087 Score 164 E Value 3e-39 Identity 12.10% Align. Length 695bp (88.87%) Frame 1
gag/pol polyprotein - maize retrotransposon Hopscotch gb|AAA57005.1| copia-like retrotransposon Hopscotch polyprotein
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU10682.1| Score 162 E Value 7e-39 Identity 12.40% Align. Length 698bp (89.26%) Frame 1
putative polyprotein [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0031H20
Clone
Clone name
hba-31h20
LE_HBa0031H20
P031H20
Clone type
BAC
Contamination
none
Estimated length
85,264
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found