Clone Read LE_HBa0031N02_T7_140008

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0031N02_T7_140008
Primer
T7
ID from Seq. Facility
LE_HBa_031_N02-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
830 trimmed for vector and quality, 886 raw
Genbank Accession
DU048681
Sequence
>LE_HBa0031N02_T7_140008 (raw untrimmed)
ACCCCGGGACCCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTATTTCTCATCTGATCCATTTTTTCACGAATCTCATTTGTGGCTGGGTTG
TGAGTGGACTGCACTGAGAAGGTGTTTCTCCCGGTATCAGACTTCTTAGTACTCCAAGTTTTATTATTCCGGGAGATTTTCTCTAATTTTTCAACAATAT
CAGCATAAGGACATTTCCCATAAGATCCACCTGCTATATTGTCCAACACCGCTTTATTATTATCATCCTGTCCCCGATAGAAGTATTCCTTTAGTGACTC
ATCATCTATATGGTGATTTGGAACACTTCTCAAGAATGAGGTGAATCTATCCCAAGAACTACTAACTGACTCTCCTGGTAGTGCCACAAAGTTGTTCACT
CTGTCTTTGTGGTTTAGTTTCTTGGAGACCGGATAGTAGTGTGCTAAGAAGACATCCCTTAGTTGGTTCCAAGTGAAGATTGAGTTGTATGGGAGCTCAG
TGAACCACATAGCAGCCTCTCCCGTCAGTGAGAGAGGAAACACTTTGAGACCTATTACATCTAAATCCAAATCAGGCCTCCCTACACAGCTTTTACACAC
TGCCCTTACCTTAGCTATATGGGCATGTGGATCCTCAGAAGGTAGCCCTGAAAACAAACCTCTGGCAGTGAGCATTTGCATCAGGCTACTAATTACCACA
AAGGTGTGGCCTGTGGGTAGAGGAGGTAAGACAAGTGGCCCATCAGAGTCTGCTATGTTATCATAACCTCTATAGTATGCTTGGGGCCGTGGAACGGGAT
TTTGTCCCCTCTTTGGTGTTCACCCGGAGCTTCCGGTAAAACTGACCTTGAACATCATCAGAGTGGGATGTTCTGGTTTAATATCA
>LE_HBa0031N02_T7_140008 (trimmed for quality and cloning vector)
AGCTTATTTCTCATCTGATCCATTTTTTCACGAATCTCATTTGTGGCTGGGTTGTGAGTGGACTGCACTGAGAAGGTGTTTCTCCCGGTATCAGACTTCT
TAGTACTCCAAGTTTTATTATTCCGGGAGATTTTCTCTAATTTTTCAACAATATCAGCATAAGGACATTTCCCATAAGATCCACCTGCTATATTGTCCAA
CACCGCTTTATTATTATCATCCTGTCCCCGATAGAAGTATTCCTTTAGTGACTCATCATCTATATGGTGATTTGGAACACTTCTCAAGAATGAGGTGAAT
CTATCCCAAGAACTACTAACTGACTCTCCTGGTAGTGCCACAAAGTTGTTCACTCTGTCTTTGTGGTTTAGTTTCTTGGAGACCGGATAGTAGTGTGCTA
AGAAGACATCCCTTAGTTGGTTCCAAGTGAAGATTGAGTTGTATGGGAGCTCAGTGAACCACATAGCAGCCTCTCCCGTCAGTGAGAGAGGAAACACTTT
GAGACCTATTACATCTAAATCCAAATCAGGCCTCCCTACACAGCTTTTACACACTGCCCTTACCTTAGCTATATGGGCATGTGGATCCTCAGAAGGTAGC
CCTGAAAACAAACCTCTGGCAGTGAGCATTTGCATCAGGCTACTAATTACCACAAAGGTGTGGCCTGTGGGTAGAGGAGGTAAGACAAGTGGCCCATCAG
AGTCTGCTATGTTATCATAACCTCTATAGTATGCTTGGGGCCGTGGAACGGGATTTTGTCCCCTCTTTGGTGTTCACCCGGAGCTTCCGGTAAAACTGAC
CTTGAACATCATCAGAGTGGGATGTTCTGG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.979897
Expected error %
0.7621
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38730.1| Score 204 E Value 2e-51 Identity 17.90% Align. Length 584bp (70.36%) Frame 1
putative reverse transcriptase [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAB18645.1| Score 122 E Value 2e-26 Identity 9.40% Align. Length 677bp (81.57%) Frame 1
unknown [Hordeum vulgare] pir||T06196 hypothetical protein - barley
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0031N02
Clone
Clone name
hba-31n2
LE_HBa0031N02
P031N02
Clone type
BAC
Contamination
none
Estimated length
73,421
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found