Clone Read LE_HBa0169H19_SP6_14023

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0169H19_SP6_14023
Primer
SP6
ID from Seq. Facility
LE_HBa_169_H19-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
617 trimmed for vector and quality, 815 raw
Genbank Accession
DU032478
Sequence
>LE_HBa0169H19_SP6_14023 (raw untrimmed)
GTTTTCGAAGCTCAAGACTTTCGTTGACTACCGCACCAATCCTTACCCTGCCAGTAGAAGGTAAGAATTTCCCTTTATAGTGTGATGCATCCTATTCAGG
TTTGGGTGCAGTACTTATGCAAGAGAAGAATGTAATTGCTTATGCTTCGAGGCAATTAAAGGTGCACGAACATAATTATCCGACCCATGATTTGGAGTTG
GCTGCGGTAGTATTTGCATTAAAGCAATGGAGACACTATCTATATGGGGTTAAGTGTGAAGTCTATACGGATCATCGTAGCCTACAGTATGTCTTTACTC
AGAAAGATTTGAATTTAAGATAGAGAAGGTGGATGGAACTACTGAAGGATTATGACATCATTATTTTGTATTATCCGGGAAAAACTAATGTTGTGGCAGA
TGCTTTAAGTAGAAAGGCAGGGAGCATGGGAAGTCTAGCCCACTTGCAAGTTTCAAGACGCCCATTGGCTAGAGAGGTACAGATTCTGGCTAATGACTTA
ATGAGGCTAGAAATAAATAAGAAGGGGGGATCTTTGGCCTGTGTGGAGGCGAGATCTTCCTTTCTTGACAAGATTAAGGGAAAGCAGTTTAATGATGAGA
AGCTGATTCGGATTCGAGATAAGATGTCGCAAGGAGAGGCTAAAGAAGCAAAAATCGACCAGGAAGGTGTTTTAATAATTAAGGGAAGGGTATGTGTGCC
CCTCCTCGATGATTTTGTTCCCCCTATTCCTTACAAAAGGCTCATATTCAAGGTATTTCTATTCTCTCTGGTTCCACCAAGTATGTTCCTGCGACCTAAA
ACTACTCATTTTTGT
>LE_HBa0169H19_SP6_14023 (trimmed for quality and cloning vector)
TGACTACCGCACCAATCCTTACCCTGCCAGTAGAAGGTAAGAATTTCCCTTTATAGTGTGATGCATCCTATTCAGGTTTGGGTGCAGTACTTATGCAAGA
GAAGAATGTAATTGCTTATGCTTCGAGGCAATTAAAGGTGCACGAACATAATTATCCGACCCATGATTTGGAGTTGGCTGCGGTAGTATTTGCATTAAAG
CAATGGAGACACTATCTATATGGGGTTAAGTGTGAAGTCTATACGGATCATCGTAGCCTACAGTATGTCTTTACTCAGAAAGATTTGAATTTAAGATAGA
GAAGGTGGATGGAACTACTGAAGGATTATGACATCATTATTTTGTATTATCCGGGAAAAACTAATGTTGTGGCAGATGCTTTAAGTAGAAAGGCAGGGAG
CATGGGAAGTCTAGCCCACTTGCAAGTTTCAAGACGCCCATTGGCTAGAGAGGTACAGATTCTGGCTAATGACTTAATGAGGCTAGAAATAAATAAGAAG
GGGGGATCTTTGGCCTGTGTGGAGGCGAGATCTTCCTTTCTTGACAAGATTAAGGGAAAGCAGTTTAATGATGAGAAGCTGATTCGGATTCGAGATAAGA
TGTCGCAAGGAGAGGCT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.970386
Expected error %
0.491836
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38745.1| Score 282 E Value 4e-75 Identity 22.70% Align. Length 611bp (99.03%) Frame 1
putative polyprotein, 3'-partial [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT66771.1| Score 281 E Value 7e-75 Identity 23.00% Align. Length 599bp (97.08%) Frame 1
putative polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0169H19
Clone
Clone name
hba-169h19
LE_HBa0169H19
P169H19
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found