Clone Read LE_HBa0044M13_SP6_143053

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0044M13_SP6_143053
Primer
SP6
ID from Seq. Facility
LE_HBa_044_M13-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
611 trimmed for vector and quality, 842 raw
Genbank Accession
DU043362
Sequence
>LE_HBa0044M13_SP6_143053 (raw untrimmed)
ATGGTTTCTCAAACGTCTCAGTGCAATTACGGGAAGCAATATGAAGAGAATCCCTTGACAAATCGTGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTT
ATTTCTGACACATTAGTGGGTCGTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGG
ACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCGAATGCTCTTCATGTTCCTT
CTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCA
GGGGCATTCATAAGACCAAAGGACATCACTACAAATTTGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATT
GATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCGGGGAAGAGGATACTTGTTCTTTAT
GGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCGAGGAGATGCACTTGGTC
TAATGAAGCCTTTGTTCAAAAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCAATCTATAAGGGGGGTATAGAAAAGGGGCGAGTTA
CCGGGTTCCAAAATCAATACAAAAGTTCAAAATCCCATTCCG
>LE_HBa0044M13_SP6_143053 (trimmed for quality and cloning vector)
GAGAATCCCTTGACAAATCGTGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTGGGTCGTACCCAATTCTTCACTGTCTCA
ATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAA
GCTTTTTCTCCCTCAACATTTCCAATACCATTCTCGAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCAC
GAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCATAAGACCAAAGGACATCACTACAAATTTGTAATGC
CCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCAC
CTTGTAACTGATCGAACAAATCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACT
CCATCCTTCTT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.980467
Expected error %
0.3104
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38745.1| Score 320 E Value 2e-86 Identity 25.20% Align. Length 578bp (94.60%) Frame 2
putative polyprotein, 3'-partial [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38744.1| Score 315 E Value 4e-85 Identity 24.40% Align. Length 593bp (97.05%) Frame 2
putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0044M13
Clone
Clone name
hba-44m13
LE_HBa0044M13
P044M13
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found