Clone Read LE_HBa0170J13_SP6_14664

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0170J13_SP6_14664
Primer
SP6
ID from Seq. Facility
LE_HBa_170_J13-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
530 trimmed for vector and quality, 850 raw
Genbank Accession
DU032977
Sequence
>LE_HBa0170J13_SP6_14664 (raw untrimmed)
TAATCGGTAAGGAGCAATCGCCGACGGAATAAGACCCCCTATAGCATTTCCTTCAGCACTCAAATGAACCACCTTTGAACAGTTAGCAATTGCAGAGGGC
AAAGTTCCAACCCCTTTGTTGTACGCAAGCCAAAGGTACTGAAGCTGCTGAAGCCGGCCGAGACTCGCCGGAATTTCGCCGGAAAGGCGATTATAAGAAA
GATTAATGAGAAGTAACTGAGACCTGTCAGAAAATTTACTCGGAATGTCTCCTGAAAACAAGTTAGACGAAAGATCAAAGTATCGTAGACTCTGAGGAAG
CTCTCCGGGGATTTCACCAGACAGCTGATTTCCAGAAACTTCAAAGATTTGTAAATCAGTAAGGTTGAATATTTCCGGCGGAAGATTACCGGAAAATGCA
TTACCCTGTAAAAAAACAGAATGCAAAAGGGTACATTTGGATAATGAAGCTGGAACAGTGCCATTAAAGAAGTTGGACCGGAGGCTTAACTTGCGCAGCA
TGCGCAGGTTGCCAATTTGTGTAGTGAGTGGTCCACTAAGTTGCAAATGAGGTAAACTAAGATCACCGACCCGTCCATTGATGCAGAAAACACCGCCTCT
CATTTTTGGGAGCAAAATAGGAAGATGATTCTCAGTCTGTGAGTGCACCTTGTGGATTCACCATTTTCTGAGTTTATTAGATCTTAATCTCCTTTGTTTT
TTCTAATAGTTTTGGGTTTTGTCTTTTTCTTTTGTTATTTTTGTATTTAATCTCCTTTTTTTTACTTCTTTCTTTCTCTCTAGTCATGATACTATTCATT
CATAACTGTTTTCTAGCTTATGTTCTTTTTTTAAGTTTCTAATTGTGAGT
>LE_HBa0170J13_SP6_14664 (trimmed for quality and cloning vector)
TCGCCGACGGAATAAGACCCCCTATAGCATTTCCTTCAGCACTCAAATGAACCACCTTTGAACAGTTAGCAATTGCAGAGGGCAAAGTTCCAACCCCTTT
GTTGTACGCAAGCCAAAGGTACTGAAGCTGCTGAAGCCGGCCGAGACTCGCCGGAATTTCGCCGGAAAGGCGATTATAAGAAAGATTAATGAGAAGTAAC
TGAGACCTGTCAGAAAATTTACTCGGAATGTCTCCTGAAAACAAGTTAGACGAAAGATCAAAGTATCGTAGACTCTGAGGAAGCTCTCCGGGGATTTCAC
CAGACAGCTGATTTCCAGAAACTTCAAAGATTTGTAAATCAGTAAGGTTGAATATTTCCGGCGGAAGATTACCGGAAAATGCATTACCCTGTAAAAAAAC
AGAATGCAAAAGGGTACATTTGGATAATGAAGCTGGAACAGTGCCATTAAAGAAGTTGGACCGGAGGCTTAACTTGCGCAGCATGCGCAGGTTGCCAATT
TGTGTAGTGAGTGGTCCACTAAGTTGCAAA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.982528
Expected error %
0.2621
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g36180.1 Score 226 E Value 4e-60 Identity 65.30% Align. Length 527bp (99.43%) Frame 3
68417.m05148 leucine-rich repeat family protein contains protein kinase domain, Pfam:PF00069; contains leucine-rich repeats, Pfam:PF00560
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g75640.1 Score 187 E Value 4e-48 Identity 54.00% Align. Length 527bp (99.43%) Frame 3
68414.m08788 leucine-rich repeat family protein / protein kinase family protein contains protein kinase domain, Pfam:PF00069; contains leucine-rich repeats, Pfam:PF00560
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB81527.1| Score 226 E Value 2e-58 Identity 65.30% Align. Length 527bp (99.43%) Frame 3
putative receptor protein kinase [Arabidopsis thaliana] emb|CAA18124.1| putative receptor protein kinase [Arabidopsis thaliana] pir||T04587 hypothetical protein F23E13.70 - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_195341.2| Score 226 E Value 2e-58 Identity 65.30% Align. Length 527bp (99.43%) Frame 3
leucine-rich repeat family protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0170J13
Clone
Clone name
hba-170j13
LE_HBa0170J13
P170J13
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found