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Clone Read LE_HBa0071E11_T7_15957

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0071E11_T7_15957
Primer
T7
ID from Seq. Facility
LE_HBa_071_E11-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
759 trimmed for vector and quality, 802 raw
Genbank Accession
DU033987
Sequence
>LE_HBa0071E11_T7_15957 (raw untrimmed)
GCGTGTTCCGGGGGGTCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGTTGATAAAATTTGACAATGTACCTTTTTAACAAAAGTAGACCATGACAAAG
TGACACCAATGAAAACAATGTAGAAGAAAGGTCCTCATAGATCTTAATCACGAAGAGCCTTGCCAGGATCTTCTCTATAAGGATTAGGGAAAACCACCAG
CTTCAAATTACTAACAATTCTAGGCAGATCTCTTTTGACGGTATCCCAAACGGGTTCTATAAGGGTATTGGGAGGCGATCCAAATCCAGTAGCAGCTATA
TTCGACTGTACCGATGAAGGTAGGGGTTGTGGAGATGAAATGGCGGGAACAGGTATAGCACCACGAGGGGAAGGAGGGCGTGCTGGAAGGACAATAGAAG
GATTGGAATAGATGAGGTTTTCAATTTTATCAATGTCGGATTGATATGATGAGTGAAGAGGTATAGTGTCTCCATGTGACATTTTTTCCGGTAGCTCTCA
GATTTGCAGAGATGATCGGAGATGGAGGACAAGGCGGAATTGAGTGAGTGGATGGGTGGTGTAACTGGTGTTGCCCTGTTGAGTTGTAAATGCAGGGAAA
ATGCCCAGTCGTATTGTAAGAAATTTGGCACTTGTTGGGAAAAAAGAAGAAGAAAATAAACAAAAACACCAAGGATATGAGAAGTGTGTGTTGTGGCACT
ATGCTAACTCCGTTCTTTATAAAATGTAATAAAAAATCTTAACATATTTTTTGAAATTTACTCCATCAAAATTAATTTAATTACACTCCATTTCCAAATT
AC
>LE_HBa0071E11_T7_15957 (trimmed for quality and cloning vector)
AGCTTGTTGATAAAATTTGACAATGTACCTTTTTAACAAAAGTAGACCATGACAAAGTGACACCAATGAAAACAATGTAGAAGAAAGGTCCTCATAGATC
TTAATCACGAAGAGCCTTGCCAGGATCTTCTCTATAAGGATTAGGGAAAACCACCAGCTTCAAATTACTAACAATTCTAGGCAGATCTCTTTTGACGGTA
TCCCAAACGGGTTCTATAAGGGTATTGGGAGGCGATCCAAATCCAGTAGCAGCTATATTCGACTGTACCGATGAAGGTAGGGGTTGTGGAGATGAAATGG
CGGGAACAGGTATAGCACCACGAGGGGAAGGAGGGCGTGCTGGAAGGACAATAGAAGGATTGGAATAGATGAGGTTTTCAATTTTATCAATGTCGGATTG
ATATGATGAGTGAAGAGGTATAGTGTCTCCATGTGACATTTTTTCCGGTAGCTCTCAGATTTGCAGAGATGATCGGAGATGGAGGACAAGGCGGAATTGA
GTGAGTGGATGGGTGGTGTAACTGGTGTTGCCCTGTTGAGTTGTAAATGCAGGGAAAATGCCCAGTCGTATTGTAAGAAATTTGGCACTTGTTGGGAAAA
AAGAAGAAGAAAATAAACAAAAACACCAAGGATATGAGAAGTGTGTGTTGTGGCACTATGCTAACTCCGTTCTTTATAAAATGTAATAAAAAATCTTAAC
ATATTTTTTGAAATTTACTCCATCAAAATTAATTTAATTACACTCCATTTCCAAATTAC

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.966331
Expected error %
0.871812
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g30260.1 Score 174 E Value 5e-44 Identity 23.40% Align. Length 410bp (54.02%) Frame 3
68417.m04302 integral membrane Yip1 family protein contains Pfam domain, PF04893: Yip1 domain
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g18840.1 Score 167 E Value 4e-42 Identity 23.60% Align. Length 410bp (54.02%) Frame 3
68415.m02194 integral membrane Yip1 family protein contains Pfam domain, PF04893: Yip1 domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB81019.1| Score 178 E Value 2e-43 Identity 23.50% Align. Length 416bp (54.81%) Frame 3
putative protein [Arabidopsis thaliana] emb|CAB52470.1| putative protein [Arabidopsis thaliana] pir||T14086 hypothetical protein F9N11.110 - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_915653.1| Score 175 E Value 1e-42 Identity 24.80% Align. Length 407bp (53.62%) Frame 3
P0677H08.6 [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0071E11
Clone
Clone name
hba-71e11
LE_HBa0071E11
P071E11
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found