Clone Read LE_HBa0005B24_SP6_1630

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0005B24_SP6_1630
Primer
SP6
ID from Seq. Facility
LE_HBa_005_B24-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
582 trimmed for vector and quality, 771 raw
Genbank Accession
DU021918
Sequence
>LE_HBa0005B24_SP6_1630 (raw untrimmed)
AGGCAAGAAAAAGGCCTATTGACTTCAGTCCCAGTGGGATTGATTTGGAGCAAGTAATGGTGTGGGCTGGGGTTTCCAGAGATGTTTGTAAAATGGATAA
TGAAATGTGTTAAAACAGTGAACTACTCCATAGTAGTTAATGGACAGATTTCACAGAGTTTTGATGCAGCTAAAGGTTTGAGGCAAGGAGATCCAATGTC
TCCCTTCTTGTTTGCTATAGCGATGGAGTATCTGAGTAGGCTGCTTAAGGGTCTTAGAGAAGATAAGCAGTTCAAGTATCATCCTAGGTGCTCTAAACTT
GAAATTACTCATCTATGTTTTGCAGATGATTTATTAATGTTTGCTAGAGGAGATCTGGAATCTGTTAAAGGTATGCAATTGTGTTTTTCACAATTTTCTC
AAGCTTCAGGACTACAAGAAAATCTAAGTAAGAGCTCAATATATTGTGGAGGGGTTCAGCAATAAGTGAAGAATCAGATTGTGCAGCAACTAGGATATAA
TATGGAGGAACTTCCTTTCAAATATCTGGGAGTGCCTTTATCAACCAAGAAGATGTCTGTGATGCAATGGTACCCTCTCATAGAGAAAATAATGGCAAGA
ATCACCTCATGGACATCTAGAAAGTTATCATATGCAGGAAGGACTCAGCTAGTTCCGACAGTTCTCTTTGGTGTTCAAGCTTATTGGGCTCCAACTAAAT
TCTTTTTCCAACTAAGGTAATCAAATTTATATATAGTTATTGTGTAAGAAGTTTATCTTTGGTCTGGAGTT
>LE_HBa0005B24_SP6_1630 (trimmed for quality and cloning vector)
TTTGGAGCAAGTAATGGTGTGGGCTGGGGTTTCCAGAGATGTTTGTAAAATGGATAATGAAATGTGTTAAAACAGTGAACTACTCCATAGTAGTTAATGG
ACAGATTTCACAGAGTTTTGATGCAGCTAAAGGTTTGAGGCAAGGAGATCCAATGTCTCCCTTCTTGTTTGCTATAGCGATGGAGTATCTGAGTAGGCTG
CTTAAGGGTCTTAGAGAAGATAAGCAGTTCAAGTATCATCCTAGGTGCTCTAAACTTGAAATTACTCATCTATGTTTTGCAGATGATTTATTAATGTTTG
CTAGAGGAGATCTGGAATCTGTTAAAGGTATGCAATTGTGTTTTTCACAATTTTCTCAAGCTTCAGGACTACAAGAAAATCTAAGTAAGAGCTCAATATA
TTGTGGAGGGGTTCAGCAATAAGTGAAGAATCAGATTGTGCAGCAACTAGGATATAATATGGAGGAACTTCCTTTCAAATATCTGGGAGTGCCTTTATCA
ACCAAGAAGATGTCTGTGATGCAATGGTACCCTCTCATAGAGAAAATAATGGCAAGAATCACCTCATGGACATCTAGAAAGT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.948049
Expected error %
0.350368
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g24255.1 Score 67 E Value 7e-12 Identity 12.00% Align. Length 365bp (62.71%) Frame 1
68416.m03045 expressed protein
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAC95175.1| Score 167 E Value 1e-40 Identity 14.30% Align. Length 545bp (93.64%) Frame 1
putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] pir||G84473 hypothetical protein At2g05980 [imported] - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAC33226.1| Score 163 E Value 3e-39 Identity 13.70% Align. Length 554bp (95.19%) Frame 1
putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] pir||T02730 RNA-directed DNA polymerase homolog T9I4.6 - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0005B24
Clone
Clone name
hba-5b24
LE_HBa0005B24
C01HBa0005B24
P005B24
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found