Clone Read LE_HBa0073N22_SP6_17178

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0073N22_SP6_17178
Primer
SP6
ID from Seq. Facility
LE_HBa_073_N22-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
775 trimmed for vector and quality, 880 raw
Genbank Accession
DU034980
Sequence
>LE_HBa0073N22_SP6_17178 (raw untrimmed)
GGGGAAGCCGGCCGGTGCTTGCTGGGTGGTCCACATTGAGGATCAGTCCTCTGTTACTAAGAAATGTGGTCATATGGCTGGTAAAGTTCTTGTTGCTGTA
AGTGAACATATTAACAGGCTTGTGGCTGCAAGGTTGCAGTTTGATGTCATGGGGACTGAGACAGTCCTCGTGGCTCGTACTGATGCGGTTGCAGCCACAT
TGATCCAAACCAATGTGGATACAAGGGATCATCAGTTCATTTTGGGTGCTTCCAACCCGAATCTCAAGGGCAAGGGTTTGGCTACTCTTTTGTCTGAAGC
TATGGCTGCAGGCAAAACAGGGCCGGAACTTCAAGCCATTGAGGATAACTGGCTTGGAATGGCTGAACTCAAGACATTTTCTCAATGTGTCACTGATGCA
ATCAAGAAAATGAACCTCGCGGAGTATGAGAAGCAGAGGAAGTTGAACGAATGGATGAATCATTCGAGCTATGAGAAATGTCTTTCGCACGAACAAGCTA
GGGAGGTAGCTGAAAGACTTGGCCTTCCTAATCTCTTTTGGGACTGGGACTTGCCTAGAACCAGAGAAGGGTTCTACAGGTTTCAGGGCTCAGTAGAGGC
TGCAATTGTTCGCGGATGGGCTTTTGCCGAGTACTGTGATCTAGTCTGGATGGAGACATCAAGTCCTGATATGGTGGAATGCACAAAATTTTCTCAAGGA
GTTAAGACTCTAAGGCCTGAGCTGATGCTGGCTTACAATCTGTCTCCCTCATTCANTTGGGATGCATCAGGGATGAATGATAACCAAATGATGGATTTCA
TTCCAAGAATAGCCCAATTANGCTATTGCTGGCAGTTCATTACTTTAGCTGGTTCCATGCCGATGCACTCATCGTCCACA
>LE_HBa0073N22_SP6_17178 (trimmed for quality and cloning vector)
ACATTGAGGATCAGTCCTCTGTTACTAAGAAATGTGGTCATATGGCTGGTAAAGTTCTTGTTGCTGTAAGTGAACATATTAACAGGCTTGTGGCTGCAAG
GTTGCAGTTTGATGTCATGGGGACTGAGACAGTCCTCGTGGCTCGTACTGATGCGGTTGCAGCCACATTGATCCAAACCAATGTGGATACAAGGGATCAT
CAGTTCATTTTGGGTGCTTCCAACCCGAATCTCAAGGGCAAGGGTTTGGCTACTCTTTTGTCTGAAGCTATGGCTGCAGGCAAAACAGGGCCGGAACTTC
AAGCCATTGAGGATAACTGGCTTGGAATGGCTGAACTCAAGACATTTTCTCAATGTGTCACTGATGCAATCAAGAAAATGAACCTCGCGGAGTATGAGAA
GCAGAGGAAGTTGAACGAATGGATGAATCATTCGAGCTATGAGAAATGTCTTTCGCACGAACAAGCTAGGGAGGTAGCTGAAAGACTTGGCCTTCCTAAT
CTCTTTTGGGACTGGGACTTGCCTAGAACCAGAGAAGGGTTCTACAGGTTTCAGGGCTCAGTAGAGGCTGCAATTGTTCGCGGATGGGCTTTTGCCGAGT
ACTGTGATCTAGTCTGGATGGAGACATCAAGTCCTGATATGGTGGAATGCACAAAATTTTCTCAAGGAGTTAAGACTCTAAGGCCTGAGCTGATGCTGGC
TTACAATCTGTCTCCCTCATTCANTTGGGATGCATCAGGGATGAATGATAACCAAATGATGGATTTCATTCCAAG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.973077
Expected error %
0.473808
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g21720.1 Score 403 E Value 1e-113 Identity 24.50% Align. Length 770bp (99.35%) Frame 1
68416.m02740 isocitrate lyase, putative similar to isocitrate lyase GI:167144 from [Brassica napus]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
sp|P49297|ACEA_LYCES Score 518 E Value 1e-146 Identity 33.10% Align. Length 770bp (99.35%) Frame 1
Isocitrate lyase (Isocitrase) (Isocitratase) (ICL) pir||T06353 isocitrate lyase (EC 4.1.3.1) - tomato gb|AAA82738.1| isocitrate lyase
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAG44479.1| Score 457 E Value 1e-127 Identity 28.70% Align. Length 770bp (99.35%) Frame 1
isocitrate lyase [Ipomoea batatas]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0073N22
Clone
Clone name
hba-73n22
LE_HBa0073N22
C07HBa0073N22
P073N22
Clone type
BAC
Contamination
none
Estimated length
90,955
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found