Clone Read LE_HBa0076M05_SP6_17864

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0076M05_SP6_17864
Primer
SP6
ID from Seq. Facility
LE_HBa_076_M05-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
417 trimmed for vector and quality, 739 raw
Genbank Accession
DU035539
Sequence
>LE_HBa0076M05_SP6_17864 (raw untrimmed)
GCGGTGGTGCTGTTTGTTGATTAAAGAATGGGAAAGGGTTATAGCTTATCGCCTCCACAAAATTCGAAGGTTCATGAGAAGAAATACCCAACCCATGATC
TAAAGTTGGCTTTCGTAGCTTTTGCTTTAAAAATATAGTGCCATTATCTTTATAATGTTCATGTGGGTGCGTTCACTAATCACAAGAGTCTACAGTATGT
GTTTAGTCAAAAAGAACTTAATTTCAAACAAAGGTGGTAGTTAGAATTCCTCTAGGATTATGACACGAGTATTCTTTATCACACGGGTAAGGGTAATGTT
GTTGTTGATGTCTTGAGCAGGTTATCTATGGGTAGTACCAACCATTTTAAGGAAGATAAGAAAGAGCTAATAAAATATGTGCACAACTTGCACGGTTGCG
AGTCTGACTAATGTATTCCACATAAGGAGGAGTAGTGGTTATTAATTGGGCTGAATCATCCTTAGTGTTACAAGTGAAATTAATGAAAATCATGATCAAG
ACCCTATTTTGCTAAAATTGAAGGCATATATCCATAAGCAAAAATTTATGGCTTTTGAACAAGGGGAGATAGCGTATTTAGATATCGAGGAACATTGTAT
GTACTAATTCGTGATGAACTGACAGAAAATTCTCATTGTTGGAACACTTCCGAATAGGGCTCTCTACCAGTTTAGTTGACACTCTGGATAAAATCTCCAC
TAAATAAAAGTAAAAAAACACTATGCCCCAAGGGGTTCG
>LE_HBa0076M05_SP6_17864 (trimmed for quality and cloning vector)
ATAGCTTATCGCCTCCACAAAATTCGAAGGTTCATGAGAAGAAATACCCAACCCATGATCTAAAGTTGGCTTTCGTAGCTTTTGCTTTAAAAATATAGTG
CCATTATCTTTATAATGTTCATGTGGGTGCGTTCACTAATCACAAGAGTCTACAGTATGTGTTTAGTCAAAAAGAACTTAATTTCAAACAAAGGTGGTAG
TTAGAATTCCTCTAGGATTATGACACGAGTATTCTTTATCACACGGGTAAGGGTAATGTTGTTGTTGATGTCTTGAGCAGGTTATCTATGGGTAGTACCA
ACCATTTTAAGGAAGATAAGAAAGAGCTAATAAAATATGTGCACAACTTGCACGGTTGCGAGTCTGACTAATGTATTCCACATAAGGAGGAGTAGTGGTT
ATTAATTGGGCTGAATC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.959393
Expected error %
0.180233
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAV31171.1| Score 150 E Value 1e-35 Identity 23.10% Align. Length 323bp (77.46%) Frame 1
putative polyprotein [Solanum tuberosum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38744.1| Score 148 E Value 5e-35 Identity 22.80% Align. Length 323bp (77.46%) Frame 1
putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0076M05
Clone
Clone name
hba-76m5
LE_HBa0076M05
P076M05
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found