Clone Read LE_HBa0077G24_SP6_18382

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0077G24_SP6_18382
Primer
SP6
ID from Seq. Facility
LE_HBa_077_G24-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
707 trimmed for vector and quality, 904 raw
Genbank Accession
DU035977
Sequence
>LE_HBa0077G24_SP6_18382 (raw untrimmed)
CCCGTTTGCCGTAGTGCAGGATTCCAGTTGAAGAAAAGCTGTCAGTTTTAGCAGAAAGTAATGAAAGAGCAACAGAATCGAGGATTGGTGGTGGTGCATT
GGAGGGCCTTCCACCAAGGCGCAGGGATGGCCAGGATTATGCTGCTGCAGCTGGTGGTAGATGGCAGGACTTCTCCTTCTCACAAGGCAGGCAAGGTAGT
AGTGGTGGCCGAACAGGGTATGCCGGTAGTAGATCAACTTCTGGTCAAACATCGAGGGACCGTACTAATCAGGCACGAGGGACTCTTGGGGGTCAAGGCT
CAAGATATCAGAGTGGTACAACTTCCAGGGGAAGCCAGATGGATGGTTCAGGTCGCATGGTTAATCTTAACAGAGGGGGTCGTTCTTAGAGAGAGACGTG
CACAATTTTTGCATAGGAAGAATCACATATCTTGAGGGTTCCTTGTTGTAGTAGAGTTTACAGTTTTCTTTGTTTCATAGACCAAGTTCCATTGTGCTAC
ATTGTTTTGTGACTTTGTAGAGCATCTTTTGGATGTTGCACTGCTTTTCTCATTTAATGACACAACAATTCCTTTTAAATGTAATTTGCATCAAATATTA
GCTCGTAATACATACACACTAGAGTATTGTCTTTGCTAGATGTTGCTGCACAAATCTCGTAACAGATACACATTACAGTCTGCTAATACCAATATGCTCA
CTGAGTTGATTTTTTACACCCCAGCAATAGCTATGAATAGATTGAATTGATTAAGTATACCGTATTTATTAGAGATCTTTTAATAAACCACAAAAATTTA
GCAACTGCTAACTATTACTTCTTCCCTCCTACCAAATGTTATAAGTACCGTATAAACCCGAAAAATTGAAATTTGAAAATCCGAATTTTGTGGCCCTGTT
TGTT
>LE_HBa0077G24_SP6_18382 (trimmed for quality and cloning vector)
AGAAAAGCTGTCAGTTTTAGCAGAAAGTAATGAAAGAGCAACAGAATCGAGGATTGGTGGTGGTGCATTGGAGGGCCTTCCACCAAGGCGCAGGGATGGC
CAGGATTATGCTGCTGCAGCTGGTGGTAGATGGCAGGACTTCTCCTTCTCACAAGGCAGGCAAGGTAGTAGTGGTGGCCGAACAGGGTATGCCGGTAGTA
GATCAACTTCTGGTCAAACATCGAGGGACCGTACTAATCAGGCACGAGGGACTCTTGGGGGTCAAGGCTCAAGATATCAGAGTGGTACAACTTCCAGGGG
AAGCCAGATGGATGGTTCAGGTCGCATGGTTAATCTTAACAGAGGGGGTCGTTCTTAGAGAGAGACGTGCACAATTTTTGCATAGGAAGAATCACATATC
TTGAGGGTTCCTTGTTGTAGTAGAGTTTACAGTTTTCTTTGTTTCATAGACCAAGTTCCATTGTGCTACATTGTTTTGTGACTTTGTAGAGCATCTTTTG
GATGTTGCACTGCTTTTCTCATTTAATGACACAACAATTCCTTTTAAATGTAATTTGCATCAAATATTAGCTCGTAATACATACACACTAGAGTATTGTC
TTTGCTAGATGTTGCTGCACAAATCTCGTAACAGATACACATTACAGTCTGCTAATACCAATATGCTCACTGAGTTGATTTTTTACACCCCAGCAATAGC
TATGAAT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.97556
Expected error %
0.0292079
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g56150.1 Score 91 E Value 6e-19 Identity 17.80% Align. Length 353bp (49.93%) Frame 3
68416.m06241 eukaryotic translation initiation factor 3 subunit 8 / eIF3 p110 / eIF3c / p105 (TIF3C1) nearly identical to SP|O49160 Eukaryotic translation initiation factor 3 subunit 8 (eIF3 p110) (eIF3c) (p105) {Arabidopsis thaliana}
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAD39891.1| Score 95 E Value 2e-18 Identity 18.60% Align. Length 353bp (49.93%) Frame 3
putative translation initiation protein [Medicago truncatula] sp|Q9XHM1|IF38_MEDTR Eukaryotic translation initiation factor 3 subunit 8 (eIF3 p110) (eIF3c) pir||T50774 probable translation initiation factor [imported] - barrel medic
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAL13083.1| Score 95 E Value 2e-18 Identity 19.80% Align. Length 353bp (49.93%) Frame 3
putative translation-initiation factor 3 subunit [Prunus avium]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0077G24
Clone
Clone name
hba-77g24
LE_HBa0077G24
P077G24
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found