Clone Read LE_HBa0078G17_T7_19137

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0078G17_T7_19137
Primer
T7
ID from Seq. Facility
LE_HBa_078_G17-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
680 trimmed for vector and quality, 899 raw
Genbank Accession
DU036565
Sequence
>LE_HBa0078G17_T7_19137 (raw untrimmed)
TAACTTCGTTCCCGGGGGGATCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTATTATTTTGTGATATTTTCTCTAACTTTTCAGTAATCTCGGCATAAG
GACACTCCCCATAAGAACCACCCTCTATTGTGTACAACATCGCTTTGTTATATCATCTTGTCCCCGATAGAAATACTCTTTCAGAGACTCATCATCTAAG
AAGTGATTTGGGACACTTCACAAGAATTAAGTAAAACTATCCTAAGAACTGCTAACTGACTCTCCCGGTAGTGCAACAGAGTTGATCACTCTGTCTTTGT
GGTTTAGTTTCTTAGACACTGGGTAGTAGCGTGCTAAAAAAGTATCCCTTAGTTGATTCAAAGTGAAGATTGAGTTATAGGGGAGCTGAACAAACCATAT
AGAAGCCTTTTCTGTCAGTGAGAGAGGAAAAACACTTAGACCGATTACATTCATATTAAAATCAGGCCTCCCTACACAACTTTTGCACACTTCCCTTACC
TTAGCTATATGGGCATGTGGATCGTAAGAAGGTAGCCCGCAAAACAAACATCTGGTAGTGAGCATTTGCATTATTCTAATAGTTACCACAAAATTTTGGC
CATGTGGTAGAGGGGGCAAGACGAGTGGCCTTTCAGAGTCTGCTATATTTTCATATTCCCTAGTACTCTTTGAGGGAATGGAGCGGGAGGTTGTCTTTCT
TATTTCTCCTTTCTCCACGAATATCATGTATTACAGTGTCACGAGCGTCAATCAATAGTGCATTTCAGGGTCGACATCATCCCCTTGAAGGCAAAATTTT
TAATTGATTTGTTTTCACATGCCTCGCATTCCTGGGCCAATTTCCTTACCTGTCACTCCCTCCTCCCCTTATTCCGCCGTCCGGTTTTTCTCTATTTCC
>LE_HBa0078G17_T7_19137 (trimmed for quality and cloning vector)
AGCTTTATTATTTTGTGATATTTTCTCTAACTTTTCAGTAATCTCGGCATAAGGACACTCCCCATAAGAACCACCCTCTATTGTGTACAACATCGCTTTG
TTATATCATCTTGTCCCCGATAGAAATACTCTTTCAGAGACTCATCATCTAAGAAGTGATTTGGGACACTTCACAAGAATTAAGTAAAACTATCCTAAGA
ACTGCTAACTGACTCTCCCGGTAGTGCAACAGAGTTGATCACTCTGTCTTTGTGGTTTAGTTTCTTAGACACTGGGTAGTAGCGTGCTAAAAAAGTATCC
CTTAGTTGATTCAAAGTGAAGATTGAGTTATAGGGGAGCTGAACAAACCATATAGAAGCCTTTTCTGTCAGTGAGAGAGGAAAAACACTTAGACCGATTA
CATTCATATTAAAATCAGGCCTCCCTACACAACTTTTGCACACTTCCCTTACCTTAGCTATATGGGCATGTGGATCGTAAGAAGGTAGCCCGCAAAACAA
ACATCTGGTAGTGAGCATTTGCATTATTCTAATAGTTACCACAAAATTTTGGCCATGTGGTAGAGGGGGCAAGACGAGTGGCCTTTCAGAGTCTGCTATA
TTTTCATATTCCCTAGTACTCTTTGAGGGAATGGAGCGGGAGGTTGTCTTTCTTATTTCTCCTTTCTCCACGAATATCAT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.973966
Expected error %
0.758395
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38730.1| Score 110 E Value 3e-31 Identity 45.70% Align. Length 475bp (69.85%) Frame 2
putative reverse transcriptase [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0078G17
Clone
Clone name
hba-78g17
LE_HBa0078G17
C12HBa0078G17
P078G17
Clone type
BAC
Contamination
none
Estimated length
92,731
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found