Clone Read LE_HBa0142O05_SP6_200009

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0142O05_SP6_200009
Primer
SP6
ID from Seq. Facility
LE_HBa_142_O05-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 815 raw
Sequence
>LE_HBa0142O05_SP6_200009 (raw untrimmed)
TTTGGGGGGGGGAAAAAAGGGGGGTGGGGTGGTTGGGGGGTTTTTCCGTAAAGGGNNNNNNNNNNTTNNANNNNNNNNNNNNNNNNNCTTTAAAGGAATC
CGGTGTGTTNGGGGGGGNNNNNNNNNNNNNNNNGGNNNNNNNNNNNNNNNNNNNGTNNATTCGAAAGAGGGNNNNNNNNNTTNNNNNNNNNNNNGNNGNG
GGGNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGNGGGGNNNGNNNNNNNN
GGGNNNGNGGGGNNNGNNGGGGNNNGNGGNGNNNGNGNNGGGNNGGNGG
NNGNNGNNNGNNGGGNNGGNGNNNNGGGGGGNGGGGGGGGGGGGGGGNGNGNNNNNGNNGNGNNGGGNNGNNGGGGGNNNNGNNGNGGGGGNGGNGNGNG
GNNGGGGGGGGGGGGGGGGGGNNNNNNNNNGNNNNNNNNNNNNNNNNGGGNNGNNGNNNGGGGGGGGGGGGGGGGGGGGGNNNGNGNNGNGNGNGGGGGN
GGGGGNGGGGGGGGGNGGNGGGNGGNGGGGGNNNGGGNNNNGGGNNGGGGGGGGGGGGNGGGGNNGNNNGGNGGGGGGGGGGGGNNGGGGGGGGGNNNNG
GNNGGGGGGNGNNGGNNGNNNGNGGGGGGGGGGGGGNGGNGGNNGGGGGGNNNGGGGGNGGNGNNGNGGGGGGNNNGGGGNGGNGNNGGGGGGGGGNNNG
GNNGGGGGGGNNGNNNGGGGGGNNNGGGGGGGGGGGNNGGGGNNGGGGGGGGGGGNNGGNNGGGNGNGGGGNGGNNNNGNNGGGNNNGNGNGGGGGGNGN
GGNNGGGNGNGGGGN
>LE_HBa0142O05_SP6_200009 (trimmed for quality and cloning vector)
GG

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • High predicted error rate
  • Low complexity
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
25.1591
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0142O05
Clone
Clone name
hba-142o5
LE_HBa0142O05
P142O05
Clone type
BAC
Contamination
none
Estimated length
80,747
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found