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Clone Read LE_HBa0161B07_SP6_201265

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0161B07_SP6_201265
Primer
SP6
ID from Seq. Facility
LE_HBa_161_B07-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 878 raw
Sequence
>LE_HBa0161B07_SP6_201265 (raw untrimmed)
ATTGGTAGGACAGTTCATGTGGTGTTTGTCTGTGGGGTATATCTTGAAAATAGGGTTCAAGACTCAGCGAATGAGTCACTAGTTATAAGCGGTCCAAATG
CTCTAACCCAAATCTAATCGGCGCATTCGCCTCATAACGGGTCAGGTGCAAATGGTAGATATTATGGCTCCTGAGCGGATATACTTATGTTTAACACTGG
CGAGTAGTATATAACTATGATCTACAACATCCTTGCAATTGACATAACTAGCGAGTTGCAATGTTCTCGAATAACTTGTCATTGTGATCTCAATGACATG
GTTAATAAACGGACTGTACGAACACAATCAGCTCACTTTCGATGATCAATCTAGTTCTTTATATGTTTGTGAGTACAATATAACCGTAGGAAGGAATTCG
TGCTAAAGACAATGAGCATAATACGAGAACCAGAAAGAAAGATGCTCAGCCTAGTTGGTATGACCAAGCAAATCTCTTGCCGACTGTGGTGGATTCGTTC
TATAATACCAGTACTACCATTGACGAGTTATTTCCTGGTTGAGTGGTTCACTGCATATCGTTGTTCTCTANGTATTGTGCCTTTCGGAACACATGCATCT
ACATAACGTCGCTCCCTACCTAGAGTTACGACCCTCCGCTCGACCCTATGTAACTCGTCTCATCCACTCACTTGGTTGTCCCGTGTCGCGACTGAGTCCT
TGACTGCTCTAGCTCTTACCACCACGAGGCTCTGTTATCGGCCTTCCTCGCTACCTCCCTGCCTACCCTACCTTGCACACTCTACGACCTCTGCACGAGT
CATCAGAGTATGTGAACCAAAACTCCTGCATGGAATGAGCAAACTACTCGACGGTCTGTTTAGCTCACGCTCTGACAT
>LE_HBa0161B07_SP6_201265 (trimmed for quality and cloning vector)
AT

This is probably not a useful sequence.

Problems:
  • Low complexity
  • High predicted error rate
  • Short cloning insert
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
5.25059
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0161B07
Clone
Clone name
hba-161b7
LE_HBa0161B07
P161B07
Clone type
BAC
Contamination
none
Estimated length
117,358
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found