Clone Read LE_HBa0161C15_SP6_201329

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0161C15_SP6_201329
Primer
SP6
ID from Seq. Facility
LE_HBa_161_C15-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 1158 raw
Sequence
>LE_HBa0161C15_SP6_201329 (raw untrimmed)
TGTGTGACTCAGAGGTGTTATATACTATAGGAGAGTGGGCATCCTCCCTCTTATTGAGATGGTAGACGTCACACCTCTAATCTATGCCAGTGGAGAGTTC
GTATAATATCATTTCTCGATGACNGCTTCTTCTAGTAGTGGCGCTCATGATCTGAATGCANGTCACCGCTNGCATCGTGTCGACTCGTGACGACGTCTCT
CCTGTGGGCGGAACATTATATCGTCACTGTCTATTGCTCGGGTAGATAAGTTTGGCTTGACTGTCGNCCNACTACGTACCAACCTCGACGAACCAGCATG
CTCTGCGACTTGCGCAAGGATGCATGACCATGTGCTACTGAGATCGGAGCTAACNCGTACTCATGTGCATCGCAAGCGGTGCGAGGCACTAGATAATCAT
TGATACTACTGATCAGGTCGGTGTTTATAGGTNTGCTGCTTGATCGCTTCTATCATCATCTNACATCCTATGCANATGTGTAAGACACGGAGTGTGAGTG
GTGAAGGCGCCAGTAGAGGTGATGAGTGATGTTNTTCACTTAGTACTATGGGCACGTAGGATTCATGCTGATGACGGAGAGGGATTGAGCACAGGCATTA
CGCTGTATACTGTGCTCCACACACCGACTCATCGCCCCACTCTNCCATCACGTCGCCTTCTATACTACACTACAGTCGACACTACATGTCCAGCTTCATA
TCTACTGTGTATACGCTCAGCATGATAGATATGTGAAGAACAAATATTACAACAGCGTATATATGTCATACAACAGTACCTACATGATGCGGGTCGTACG
AGTCTGCCGCAATACACGTCATGCGAGCNCGTCTGACTCGCAGTCGCGGCATGCGCGTGACGTATGTAAGGCAACATATGTCATGACCTACCTACTGCGT
TGCGCTGCATACTGCNATGTGTTTGTCGTACGTTCTTGTCTCTGTCTNCTCTGTACNCACTCTTATTAGCACGCGAGATGCATGATAGGGATGCATTGTG
AGTGTGTGTGGTGNCTGTATGAAGTGGTGCGTATGAGNGTATGCACGGAAGTGGAGCTAGGATGCGGAAGGTGNGGTCAGATGACCATCGTATCTCTCGC
GTACTAGTTGTGGTGCGTCTGCAGAGTGTGTGGAGCGCGTTGATGAAGTCATGATGGT
>LE_HBa0161C15_SP6_201329 (trimmed for quality and cloning vector)
T

This is probably not a useful sequence.

Problems:
  • High predicted error rate
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0161C15
Clone
Clone name
hba-161c15
LE_HBa0161C15
P161C15
Clone type
BAC
Contamination
none
Estimated length
103,504
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found